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1,000 results • Page
4 of 20
Sort: Votes
Rank
Views
Votes
Replies
9
votes
19
replies
2.3k
views
There are any way to use a script for feed emboss with fasta sequence?
sequence
4.3 years ago by
schlogl
▴ 160
9
votes
8
replies
1.7k
views
Union of unaligned fastq reads
RNA-Seq
6.9 years ago by
Jeffin Rockey
★ 1.3k
9
votes
7
replies
3.8k
views
7 follow
Are 2 replicates per sample sufficient for RNA-seq data analysis?
RNA-Seq
R
Ngs
6.2 years ago by
Arindam Ghosh
▴ 510
9
votes
17
replies
2.2k
views
Creating intergenic bam file
R
genome
intergenic
alignment
7.7 years ago by
erincyurtman
• 0
9
votes
4
replies
1.3k
views
Is there any method to run tophat ?
RNA-Seq
updated 5.6 years ago by
Biostar
20 • written 5.8 years ago by
Chan
• 0
9
votes
6
replies
3.1k
views
Bug in JellyFish and DSK k-mer counting tool?
dsk
jellyfish
k-mer
7.4 years ago by
scchess
▴ 640
9
votes
7
replies
5.4k
views
How to combine a different sources of pathway database (KEGG, BioCarta) for Pathway analysis.
Pathway
enrichment analysis
GWAS
pathway analysis
7.8 years ago by
kmsh410
▴ 40
9
votes
7
replies
3.3k
views
Aligning Miseq With Deletions >10 Bases
alignment
miseq
next-gen
updated 10.8 years ago by
Biostar
20 • written 11.3 years ago by
Leszek
4.2k
9
votes
10
replies
1.9k
views
How to use Poisson distribution to get meaningful expression counts?
statistics
rna-seq
updated 2.8 years ago by
i.sudbery
19k • written 2.8 years ago by
c_u
▴ 520
9
votes
13
replies
15k
views
Sort bam file by coordinates using samtools
next-gen-sequencing
gene
rna-seq
updated 10 months ago by
Ram
43k • written 5.6 years ago by
Shahzad
▴ 30
9
votes
4
replies
5.5k
views
How to analyse normalized read count?
RNA-Seq
R
updated 16 months ago by
Ram
43k • written 8.9 years ago by
pbio
▴ 150
9
votes
16
replies
1.5k
views
I am trying to select some reference genome region of a bam file, but got an error
SAMTOOLS
updated 3.7 years ago by
lieven.sterck
15k • written 3.7 years ago by
schlogl
▴ 160
9
votes
13
replies
2.4k
views
Reannotating a gene: Identifying translation and transcription start sites
RNA-Seq
genome
gene
7.3 years ago by
rh5118
▴ 40
9
votes
6
replies
1.3k
views
Genotype meaning
genotype
BL21
2.8 years ago by
A_heath
▴ 160
9
votes
7
replies
1.1k
views
ChIP-seq; investigate binding within region of tRNA genes
tRNA
ChIP
nf-core
ChIP-seq
updated 23 months ago by
Ram
43k • written 2.0 years ago by
2138493o
▴ 20
9
votes
7
replies
2.1k
views
Sorting BLAST output files together?
blast
8.0 years ago by
zgayk
▴ 90
9
votes
7
replies
1.9k
views
Is the sequence quality good enough?
WGS
HISEQ4000
QC
5.9 years ago by
BioinfGuru
★ 1.7k
9
votes
1
reply
6.1k
views
Why does MACS2 report multiple records for the same peak region?
ChIP-Seq
macs
macs2
updated 20 months ago by
Ram
43k • written 8.5 years ago by
James Ashmore
★ 3.4k
9
votes
2
replies
5.3k
views
Biopython Import Error
biopython
updated 11.9 years ago by
Michael Kuhn
5.0k • written 11.9 years ago by
angeles.sepulvedap
• 0
9
votes
13
replies
2.0k
views
Archeological DNA sample - how to analyze
unmapped
paleogenomics
archeogenomics
Assembly
2.3 years ago by
Aruna
▴ 30
9
votes
12
replies
1.5k
views
Copy number variations analysis
R
CNV
updated 4.4 years ago by
zx8754
11k • written 4.4 years ago by
rprog008
▴ 70
9
votes
11
replies
8.2k
views
8 follow
Extremely low mapping rates with bowtie2
alignment
next-gen
updated 6.5 years ago by
Biostar
20 • written 6.6 years ago by
Sachin
▴ 10
9
votes
6
replies
3.4k
views
SOAPaligner 2.21 - does it replace all Ns by Gs in reads?
Soapaligner
alignment
updated 2.6 years ago by
Ram
43k • written 9.9 years ago by
Philipp Bayer
8.3k
9
votes
10
replies
2.2k
views
[solved] Convert fold changes of multiple transcripts of a given gene to a single value characterising this gene
RNA-Seq
7.6 years ago by
biostart
▴ 370
9
votes
9
replies
4.7k
views
ATAC-seq TSS profile plot interpretation
ATAC-seq
TSS
V-plot
4.4 years ago by
nanoide
▴ 120
8
votes
5
replies
1.6k
views
differential expression analysis with DESeq2 & edgeR
RNA-Seq
3.5 years ago by
Rob
▴ 170
8
votes
6
replies
2.6k
views
for low coverage RNAseq how many reads assigned is the bare minimum for differential gene expression analysis
RNA-Seq
5.2 years ago by
senowinski
▴ 30
8
votes
5
replies
12k
views
samtools tview symbols
samtools
updated 18 months ago by
Ram
43k • written 8.8 years ago by
biolab
★ 1.4k
8
votes
8
replies
1.4k
views
microRNA-seq sequence lenght distribution after trimming
alignment
rna-seq
5.3 years ago by
szabo.marton
▴ 10
8
votes
9
replies
3.0k
views
error in rstudio
csv
matrix
rstudio
updated 19 months ago by
Ram
43k • written 8.7 years ago by
zizigolu
★ 4.3k
8
votes
25
replies
3.0k
views
construction of a database
sql
noSQL
neo4j
database
updated 13 months ago by
Ram
43k • written 2.9 years ago by
Debut
▴ 20
8
votes
10
replies
720
views
bash script
whole-genome-sequencing
updated 12 days ago by
Ram
43k • written 20 days ago by
bestone
▴ 30
8
votes
1
reply
1.2k
views
CalculateGenotypePosteriors: A USER ERROR has occurred: Invalid argument ' '.
CalculateGenotypePosteriors
gatk
trio
ped
3.3 years ago by
DareDevil
★ 4.3k
8
votes
17
replies
4.0k
views
Getting nan value in vcftool relatedness command?
vcftools
relatedness
6.2 years ago by
Sharon
▴ 600
8
votes
3
replies
5.3k
views
Bioinformatics project for a beginner
projects
updated 21 months ago by
Ram
43k • written 8.4 years ago by
dharshank.1096
▴ 30
8
votes
3
replies
843
views
How safe the UCSC is for patients data
RNA-Seq
updated 4.7 years ago by
ATpoint
82k • written 4.7 years ago by
Sara
▴ 240
8
votes
7
replies
1.5k
views
Splitting the overall RNA-seq data
RNA-Seq
6.9 years ago by
aeserrano
▴ 40
8
votes
1
reply
1.6k
views
Genome Sequencing And Evolutionary History
evolution
updated 10.3 years ago by
Neilfws
49k • written 10.3 years ago by
robjohn7000
▴ 110
8
votes
11
replies
3.6k
views
Semantic Similarity selection in REVIGO: which is better? many clusters or few?
go
revigo
gene ontology
6.4 years ago by
Farbod
★ 3.4k
8
votes
14
replies
2.6k
views
RNA-Seq analysis with standard p-value
RNA-Seq
7.2 years ago by
####
▴ 220
8
votes
9
replies
1.5k
views
superimpose
discovery
ds
visualizer
2.9 years ago by
Alex
▴ 20
8
votes
13
replies
2.4k
views
Issue about install Cutadapt in ubuntu1404
cutadapt
7.1 years ago by
Joe
▴ 30
8
votes
6
replies
1.3k
views
How to apply bioinformatic in vaccine design?
Vaccine
updated 17 months ago by
Dunois
★ 2.5k • written 17 months ago by
Jean
▴ 50
8
votes
9
replies
1.5k
views
6 follow
Featurecount is 0 while TPM is 6289.54
TPM
Count
Feature
2.4 years ago by
zhangmeng21
▴ 10
8
votes
8
replies
1.6k
views
Clustering DNA sequences (from human genome)
sequencing
genome
4.6 years ago by
abdul.karim
• 0
8
votes
7
replies
562
views
adjusting parameters in ViolinPlot did not work
single-cell
updated 10 weeks ago by
Ram
43k • written 11 weeks ago by
synat.keam
▴ 100
8
votes
5
replies
822
views
Frustrated with DEA results
microarray
differential-expression
updated 7 months ago by
dsull
★ 5.9k • written 7 months ago by
jopadrosa
• 0
8
votes
5
replies
1.1k
views
Bioinformatics Definitions
genome
updated 2.8 years ago by
Dunois
★ 2.5k • written 2.8 years ago by
joe_genome
▴ 40
8
votes
14
replies
6.0k
views
Error in BWA-MEM running in linux
RNA-Seq
BWA-MEM
alignment
updated 6.0 years ago by
GenoMax
141k • written 6.0 years ago by
modarzi
▴ 170
8
votes
4
replies
15k
views
Use of if-else statement in snakemake rule
snakemake
if-else
python
updated 4.4 years ago by
schroder.julia
• 0 • written 6.8 years ago by
Jokhe
▴ 140
1,000 results • Page
4 of 20
Recent Votes
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Answer: How to use limma to find differentially expressed genes in response to a continu
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Comment: How to assign cell types after integration in scRNA
NGS forensics: how to know if data is fabricated
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Recent Replies
Comment: What does it mean single base resolution in sequencing?
by
dsull
★ 5.9k
Great comprehensive explanation and overview of the technologies -- with regards to sequencing assays, the one thing I'd add is SNV identif…
Answer: What does it mean single base resolution in sequencing?
by
dsull
★ 5.9k
I think that term means slightly different things in different contexts. For example, it's useful to profile mRNA modifications (e.g. m6a) …
Answer: Cannot process all the reads in a fast5 file?
by
chujie
• 0
Hi, I met the same problem, have you found the solution?
Answer: What does it mean single base resolution in sequencing?
by
LauferVA
4.2k
Hi @fe3e6f65 , In a single sentence, the answer to your question can be summarized as, "*the resolution of a genomic technology refers to …
Comment: PCA plot
by
LauferVA
4.2k
Without more context, we cannot interpret this PCA plot. There are many possibilities. In addition, this question is basic enough that it w…
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by
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22k
i have the name ready: out**liar**
Comment: What does it mean single base resolution in sequencing?
by
GenoMax
141k
Sequencing by hybridization (https://en.wikipedia.org/wiki/Sequencing_by_hybridization ) is likely not giving you single base resolution. B…
Comment: Fetch table from clinvar database according to a list of rsid
by
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▴ 20
Hii... i have updated the script in python..But, still getting no data found. Actually the data is there, i have print the parsed html file…
Comment: How to assign cell types after integration in scRNA
by
ATpoint
82k
https://bioconductor.org/books/release/OSCA.multisample/using-corrected-values.html
Comment: Downloading full alignments from Pfam
by
GenoMax
141k
Not as convenient but the entire set of full alignments can be downloaded here: https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pf…
Comment: How many reads for WGS Sequencing?
by
GenoMax
141k
> What does clipped Fastq mean? Probably means that NCBI has already scanned and trimmed adapter sequencers. > both forward and revers…
Comment: How many reads for WGS Sequencing?
by
GenoMax
141k
You can use the default `adapters.fa` file included in the `resources` folder of [**BBMap suite**][1] (program to use is `bbduk.sh`) or a p…
Comment: How many reads for WGS Sequencing?
by
GenoMax
141k
Only way to find out is to try. It may work but if it is not going to then you will find that out quick (process would likely crash because…
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
Also, there is no mention of adapter sequence so which adapter sequence should i use to remove it from some other reads?
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
Also, Do you think i can reproduce at least most part of the data from the paper just on my laptop? It has 4 logical processors (Intel(R) C…
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