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3,271 results • Page
2 of 66
Sort: replies
Rank
Views
Votes
Replies
2
votes
16
replies
6.1k
views
6 follow
bowtie (1) 0% alignment on paired-end RNAseq data
bowtie
RNA-Seq
alignment
miRNA
updated 20 days ago by
ATpoint
90k • written 6.6 years ago by
gulamaltab
• 0
4
votes
15
replies
6.0k
views
8 follow
Data retrieval from GEO
Microarray
GEO
updated 6 days ago by
GenoMax
154k • written 8.2 years ago by
lessismore
★ 1.4k
3
votes
15
replies
6.8k
views
BRIG: How to use a multi fasta file as query
software error
alignment
updated 3 months ago by
Nurgas
• 0 • written 8.1 years ago by
benoit.kunath
▴ 20
2
votes
15
replies
3.5k
views
VCF2MAF structural variant file issue.
VCF2MAF
updated 5 months ago by
eebloom
▴ 110 • written 2.3 years ago by
The_PyPanda
▴ 10
38
votes
15
replies
43k
views
12 follow
Convert between RefSeq and Ensembl Transcript?
refseq
ensembl
updated 9 months ago by
GenoMax
154k • written 11.3 years ago by
pwg46
▴ 540
3
votes
15
replies
11k
views
6 follow
Tools for raw reads that estimate the percentage of reads that hit marker genes using protein BLAST or more advanced approaches based on protein HMM …
data
raw
reads
shotgun
8 weeks ago by
shevch2009
▴ 20
60
votes
15
replies
14k
views
17 follow
Forum:
Interesting bioinformatics blogs (2017 edition)
blogs
updated 6 days ago by
schlogl
▴ 180 • written 8.6 years ago by
WouterDeCoster
48k
12
votes
15
replies
4.0k
views
6 follow
Tools to simulate Illumina short read sequences and ONT long reads with a reference genome
simulate
short-read
updated 21 days ago by
Ram
45k • written 6 weeks ago by
PolenP
▴ 10
8
votes
15
replies
7.5k
views
12 follow
ADMIXTURE Segmentatio fault
admixture
plink
vcf
updated 6 months ago by
Mwangana
• 0 • written 4.4 years ago by
pmc.sa
▴ 40
3
votes
15
replies
2.2k
views
6 follow
Trim CDS to ORF
codon
CDS
offset
transcripts
updated 5 months ago by
colindaven
8.1k • written 5 months ago by
jaredbernard
▴ 30
0
votes
15
replies
7.6k
views
chimeraTE GTF format error
chimeraTE
updated 10 weeks ago by
lieven.sterck
16k • written 12 weeks ago by
frarodmar17
• 0
1
vote
15
replies
14k
views
Hifiasm is getting killed while trying to assemble a genome
assembly
genome
hifiasm
5 weeks ago by
pranavdatar01
• 0
24
votes
15
replies
5.1k
views
8 follow
STAR aligner - Is this still maintained?
STAR
aligner
rnaseq
updated 7 months ago by
GenoMax
154k • written 9 months ago by
Joshi
▴ 10
1
vote
15
replies
9.1k
views
6 follow
High percentage of intronic/intergenic reads in RNA-seq
RNA-seq
updated 9 weeks ago by
i.sudbery
22k • written 3.2 years ago by
lluc.cabus
▴ 30
47
votes
14
replies
22k
views
14 follow
Tutorial:
Methylation Analysis Tutorial in R - Part 1
R
cancer
methylation
updated 4 months ago by
BioNoobie
▴ 20 • written 5.1 years ago by
Hamid Ghaedi
3.3k
5
votes
14
replies
4.7k
views
Understanding bowtie2 for short reference sequences
bowtie2
alignment
updated 9 months ago by
GenoMax
154k • written 3.2 years ago by
Sina
▴ 10
1
vote
14
replies
1.8k
views
Lacking exons in gtf file of a virus' genome
gtf
exon
Mapping
Hazara
VirusGenome
updated 7 months ago by
colindaven
8.1k • written 7 months ago by
ZuelTech
• 0
15
votes
14
replies
7.7k
views
8 follow
Forum:
New Macbook M4 laptops (Pro vs Max)
Pro
Max
Mac
RNA-Seq
M4
updated 3 months ago by
GenoMax
154k • written 10 months ago by
tommygoe
▴ 10
4
votes
14
replies
6.2k
views
7 follow
Is there anyone who downloaded Azimuth packges?
Azimuth
scRNAseq
updated 11 months ago by
ATpoint
90k • written 20 months ago by
kayah
▴ 20
13
votes
14
replies
64k
views
11 follow
Tools to view fastq file
fastq
updated 3 months ago by
GenoMax
154k • written 9.5 years ago by
Roden Luo
▴ 40
7
votes
14
replies
2.2k
views
Proteomics data analysis
data-analysis
biostatistics
statistics
proteomics
10 months ago by
Ariadna
▴ 20
14
votes
14
replies
14k
views
11 follow
How to extract fasta sequences from assembled transcripts generated by Stringtie
fasta
gtf
stringtie
updated 9 months ago by
Juke34
9.3k • written 8.5 years ago by
seta
★ 1.9k
7
votes
14
replies
4.0k
views
6 follow
RNA-Seq mutation calling without germline data
rna-seq
mutation
updated 12 weeks ago by
littlebioinformatician
• 0 • written 13 months ago by
marionette.kent
• 0
0
votes
14
replies
1.4k
views
Host Removal Issues Human/Dog with samples containing Eukaryotic species
Mapping
Eukarotic
Host
updated 4 months ago by
Ram
45k • written 4 months ago by
Jon
• 0
40
votes
14
replies
4.2k
views
13 follow
Forum:
How do you estimate time to complete a project or task?
career
ngs
written 9 months ago by
sviatoslav.kendall
▴ 990
13
votes
13
replies
16k
views
7 follow
Normalization Of Rna Sequencing Counts (By Ercc / Gene Length)
rnaseq
normalization
deseq
edger
updated 5 months ago by
Stephan
• 0 • written 11.8 years ago by
Sam
★ 4.8k
22
votes
13
replies
1.8k
views
6 follow
GUI commercial software for 10x single cell gene expression analysis
single-cell
software
commercial
gui
29 days ago by
firestar
★ 1.7k
9
votes
13
replies
12k
views
7 follow
Extract UMIs using UMI-tools
UMI
UMI-tools
updated 7 months ago by
bounlu
▴ 270 • written 3.5 years ago by
I.Kim
▴ 40
42
votes
13
replies
33k
views
13 follow
Gene Set Enrichment Analysis after DESeq2
RNA-Seq
DESeq2
geneontology
GSEA
updated 9 months ago by
Ram
45k • written 8.1 years ago by
Sreeraj Thamban
▴ 310
8
votes
13
replies
11k
views
7 follow
Getting sample information from GEO
GEO
NCBI
updated 7 months ago by
DareDevil
★ 4.5k • written 8.5 years ago by
Tom_L
▴ 360
13
votes
13
replies
9.4k
views
8 follow
TopHat installation error
tophat
updated 4 months ago by
david.leader
• 0 • written 8.5 years ago by
salamandra
▴ 550
9
votes
13
replies
1.6k
views
de novo chromosome level assembly
genome
assembly
chromsome
updated 5 months ago by
colindaven
8.1k • written 5 months ago by
mthm
▴ 80
4
votes
13
replies
2.2k
views
Mouse genome featureCounts
GRCm39
RNA-seq
featureCounts
10 months ago by
rajdeepboral00
▴ 70
78
votes
13
replies
44k
views
10 follow
hg19 Centromere Position and Chromosome Length
centromere
ucsc
updated 7 months ago by
Ram
45k • written 15.2 years ago by
Jdk
▴ 260
1
vote
13
replies
8.1k
views
miRNA low mapping ratings
mirna
bowtie1
preprocessing
counts
aligment
6 weeks ago by
Ant
▴ 50
40
votes
13
replies
13k
views
14 follow
Where Can I Get The Secondary Structure Of A Protein?
protein
structure
sequence
updated 4 months ago by
Krish
• 0 • written 15.8 years ago by
Giovanni M Dall'Olio
28k
1
vote
13
replies
8.1k
views
6 follow
DiffBind error when calling dba.count
ChIP-Seq
updated 9 weeks ago by
Irene
▴ 10 • written 5.4 years ago by
mropri
▴ 170
4
votes
13
replies
11k
views
7 follow
GVSA: problem with gene identifier
gvsa
RNA-Seq
gsea
updated 6 months ago by
Saravana
• 0 • written 8.6 years ago by
cmgraef
▴ 10
10
votes
13
replies
2.8k
views
undermined fastq and top unknown barcodes
bcl2fastq
updated 11 months ago by
GenoMax
154k • written 11 months ago by
1769mkc
★ 1.3k
9
votes
13
replies
3.3k
views
How are probabilities of insertions and deletions encoded in FASTQ?
fastq
phred quality score
nanopore
pacbio
indels
updated 8 months ago by
Jeremy Leipzig
23k • written 6.7 years ago by
shelkmike
★ 1.8k
14
votes
12
replies
3.7k
views
What additional info is found in BAM files from PacBio HiFi compared to Fastq files
bam
hifi
fastq
pacbio
updated 9 months ago by
Billy Rowell
▴ 520 • written 9 months ago by
Eric Normandeau
11k
4
votes
12
replies
4.1k
views
Tool:
fastplong: ultrafast preprocessing and quality control for long reads
long-reads
updated 11 months ago by
lieven.sterck
16k • written 12 months ago by
chen
★ 2.5k
5
votes
12
replies
8.3k
views
how can i download human ribosomal reference ?
RNA-Seq
rRNA
updated 11 months ago by
tomas4482
▴ 430 • written 6.5 years ago by
sabaghianamir70
▴ 70
21
votes
12
replies
2.5k
views
7 follow
Forum:
Reproducibility Crisis
R-Bioinformatics
updated 7 months ago by
i.sudbery
22k • written 7 months ago by
ParastooA
▴ 20
7
votes
12
replies
1.6k
views
miRNA low mapping(Qiagen miRNA Library Prep)
Qiagen
pipeline
trimming
alignment
miRNA
updated 5 months ago by
GenoMax
154k • written 5 months ago by
anthony.santana.703.j
▴ 30
22
votes
12
replies
1.5k
views
7 follow
Learning Nextflow
Genomic
Pipeline_analysis
Nextflow
4 months ago by
AIMAR
▴ 70
0
votes
12
replies
1.6k
views
MD5 Mismatch on chrY When Extracting CRAM Region Despite Correct Reference Genome
reference-genome
updated 8 months ago by
GenoMax
154k • written 8 months ago by
offset
• 0
15
votes
12
replies
77k
views
7 follow
Help interpreting BLAST results? (Max score/Percent. Identity/E-values)
alignment
gene
genome
updated 10 months ago by
SequenceServer
▴ 150 • written 5.1 years ago by
cia
▴ 30
4
votes
12
replies
1.6k
views
Strandedness issues in STAR quantification
STAR
stranded
updated 3 months ago by
GenoMax
154k • written 3 months ago by
marek.gierlinski
▴ 50
2
votes
12
replies
1.3k
views
Different comparisons in RNASeq Analysis
DEGs
RNAseq
updated 4 months ago by
mbyvcm
▴ 480 • written 5 months ago by
SomeOne
▴ 250
3,271 results • Page
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Thank you very much, this was really helpful. And of course, I'll try to get more information about the data as soon as possible.
Comment: Interpretation of logFC in limma-voom contrasts
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• 0
Thank you very much for the clarification and for the normalization recommendation.
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If someona has found a R-package appropriate for this purpuse, I would appreciate if you would share :)
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I understand - apologies. We all approach questions and helping others in different ways.
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I also have a follow-up question. My calculated genomic control lambda is **0.83**. As shown in the QQ plot (see Additional information), …
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Hi Mensur. Thank you for your inputs. I think I understand your point about flagging outliers based on the first two PCs that cover for onl…
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Hi Kevin. Thank you for your inputs. By every PCA round I meant, doing the PCA analysis after removing the outliers flagged in a previous P…
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Thank you so much. It helped a lot!
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Thank you for your professional reply. I will try the suggestions you provided.
Comment: Checkm results differ from database info
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Mensur Dlakic
★ 30k
> Nothing is impossible, Mensur, if you simply open your mind... Not sure why I am mentioned here. Was something wrong with my conclusion …
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I cannot wait!
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