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421 results • Page 3 of 9
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7
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9
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1.1k
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Forum: DEG analysis when not replicates are available
NOISeq RNA-Seq edgeR
updated 11 months ago by 43k • written 4.1 years ago by ★ 5.1k
19
votes
9
replies
3.7k
views
Forum: How to self-study (get onto) Bioinformatics and Data Analysis for Genomic, for working with real life genomics data?
R genome RNA-Seq Python
updated 11 months ago by 43k • written 5.8 years ago by ▴ 760
1
vote
9
replies
1.7k
views
Forum: Care to speculate? Are Protein Fragments or Entire Protein Sequences useful when classifying via Machine Learning techniques
protein Machine-Learning classification
updated 11 months ago by 43k • written 5.3 years ago by ▴ 80
2
votes
9
replies
1.4k
views
Forum: Any good idea for bioinfo final presentation?
R
updated 11 months ago by 43k • written 3.9 years ago by • 0
7
votes
9
replies
1.6k
views
Forum: 10 Most important topic in Human evolutionary genomics
evolutionary-genomics evolutionary-medicine
updated 11 months ago by 43k • written 5.1 years ago by ▴ 40
8
votes
9
replies
3.7k
views
8 follow
Forum: How can I contribute to the Bioinformatics community as a Software Engineer
software-engineer
updated 11 months ago by 43k • written 5.5 years ago by ★ 1.1k
2
votes
9
replies
1.2k
views
Forum: open source projects looking for contributors
open-source
updated 8 months ago by ▴ 70 • written 8 months ago by ▴ 20
10
votes
8
replies
3.1k
views
6 follow
Forum: Cancer research for computer science student
cancer research computer-science
updated 7 months ago by • 0 • written 6.5 years ago by ▴ 70
1
vote
8
replies
2.1k
views
Forum: Memory-driven computing accelerates genomic data processing
HPC
updated 11 months ago by 43k • written 5.3 years ago by 11k
5
votes
8
replies
2.0k
views
7 follow
Forum: Ranking of Bioinformatics tools & resources by the number of users
bioinformatics-tools
updated 11 months ago by 43k • written 5.7 years ago by ▴ 40
34
votes
8
replies
2.7k
views
9 follow
Forum: Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a master of none? How can your CV reflect the diverse skills that you have …
cv industry career
updated 11 months ago by 43k • written 4.6 years ago by ▴ 300
11
votes
8
replies
1.4k
views
6 follow
Forum: How to write a review article in bioinformatics
article review
updated 8 months ago by 43k • written 9 months ago by ▴ 10
7
votes
8
replies
2.4k
views
Forum: Virus Genome Length and GC Content of SARS-COV-2 causing COVID-19
sequence genome
updated 11 months ago by 43k • written 4.1 years ago by ▴ 30
7
votes
8
replies
1.3k
views
Forum: Guidelines / Limits for Shared Bioinformatics Support
Core Shared-Resources Collaboration
updated 11 months ago by 43k • written 4.4 years ago by 8.2k
16
votes
8
replies
2.1k
views
8 follow
Forum: What are the most important unresolved problems in Bioinformatics?
bioinformatics
updated 10 months ago by 43k • written 7.6 years ago by ★ 2.5k
26
votes
8
replies
1.7k
views
7 follow
Forum: Reasons to refuse to give support
design rna-seq statistics
updated 11 months ago by 43k • written 5.5 years ago by 8.3k
2
votes
8
replies
1.7k
views
7 follow
Forum: Which tools do you miss?
software
updated 11 months ago by 43k • written 3.7 years ago by ▴ 110
3
votes
8
replies
3.5k
views
6 follow
Forum: SSD or HHD for genome analysis
hardware genome sequencing
updated 11 months ago by 43k • written 4.6 years ago by ▴ 20
11
votes
8
replies
1.7k
views
Forum: Bioinformatics cores pricing model
pricing-models core Bioinformatics-services
updated 11 months ago by 43k • written 5.2 years ago by ▴ 160
2
votes
8
replies
1.5k
views
Forum: Learning community for newbies
python
updated 11 months ago by 43k • written 6.1 years ago by • 0
9
votes
8
replies
5.1k
views
Forum: R or python, which one do you prefer in analysing scRNAseq datasets?
R RNA-Seq python
updated 11 months ago by 43k • written 6.0 years ago by • 0
1
vote
8
replies
5.4k
views
Forum: Would you use sci-hub's mirror site?
sci-hub
updated 11 months ago by 43k • written 4.4 years ago by • 0
7
votes
8
replies
2.0k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
11 months ago by K • 0
1
vote
8
replies
1.9k
views
Forum: Statistics graduate wants to do some bioinformatics analysis
next-gen R statistics
updated 12 months ago by 43k • written 6.6 years ago by • 0
22
votes
8
replies
2.0k
views
10 follow
Forum: Is there any online course for bioinformatics right now or in the next two or three months?
online-course mooc
updated 11 months ago by 43k • written 4.0 years ago by ▴ 50
6
votes
8
replies
4.0k
views
6 follow
Forum: Workstation : More RAM or Faster RAM
RAM Configuration workstation
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
7
votes
8
replies
750
views
Forum: Bioinformatics career transition
career forum
updated 8 weeks ago by ★ 16k • written 8 weeks ago by ▴ 20
21
votes
7
replies
12k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 7 months ago by ▴ 100 • written 8.1 years ago by 11k
7
votes
7
replies
1.7k
views
Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 27 days ago by ★ 2.5k • written 27 days ago by • 0
3
votes
7
replies
1.0k
views
Forum: Construct a small computing server for GWAS Analysis
assembly
updated 11 months ago by 43k • written 5.0 years ago by ▴ 60
13
votes
7
replies
1.3k
views
Forum: Feedback for my python package to combine results from multiple classifiers
annotation protein python machine-learning
updated 11 months ago by 43k • written 3.7 years ago by ▴ 110
2
votes
7
replies
1.2k
views
Forum: Future prospects: NGS vs Gene editing (using CRISPR CAS9, AAVs and similar methods)
NGS CRISPR-Cas9
updated 11 months ago by 43k • written 4.6 years ago by ▴ 170
6
votes
7
replies
1.3k
views
Forum: Questions going missing?
meta biostars
updated 12 months ago by 43k • written 6.6 years ago by 87k
1
vote
7
replies
1.6k
views
Forum: Best online certificates / masters for Bioinformatics
learning certification courses online-training
updated 11 months ago by 43k • written 4.0 years ago by • 0
8
votes
7
replies
1.4k
views
Forum: Is it okay to pool sample for RNAseq and proteomics study?
RNA-Seq
updated 11 months ago by 43k • written 4.5 years ago by ▴ 10
2
votes
7
replies
1.5k
views
Forum: Theory v Reality
protein DNA polymorphism variation
updated 11 months ago by 43k • written 6.0 years ago by • 0
19
votes
7
replies
1.2k
views
9 follow
Forum: DNA in pixels
genome alignment sequencing
updated 11 months ago by 43k • written 3.5 years ago by ▴ 30
10
votes
7
replies
2.0k
views
Forum: Is trimming always better?
RNA-Seq QC trimmomatic trimming
updated 11 months ago by 43k • written 4.9 years ago by ▴ 330
10
votes
7
replies
2.3k
views
Forum: How to learn bioinformatics?
learning
updated 3 months ago by ★ 1.3k • written 24 months ago by ▴ 20
16
votes
7
replies
1.3k
views
Forum: What counts as "complex code"?
career
updated 11 months ago by 43k • written 5.7 years ago by ▴ 30
12
votes
7
replies
7.2k
views
Forum: Differences between SMART-seq2, SMART-seq3, and 10x
cell smartseq UMIs single 10x
updated 6 weeks ago by ★ 6.0k • written 2.7 years ago by ▴ 70
8
votes
7
replies
6.5k
views
6 follow
Forum: Bioinformatic or bioinformatics?
spelling
updated 12 months ago by 43k • written 6.6 years ago by ▴ 310
8
votes
7
replies
848
views
6 follow
Forum: Tower Server configuration for NGS data analysis
NGS
updated 11 weeks ago by ▴ 120 • written 3 months ago by • 0
11
votes
7
replies
6.6k
views
Forum: Using Graphics Processing Units (GPUs) in bioinformatics
algorithm GPU
updated 11 months ago by 43k • written 4.7 years ago by ▴ 310
2
votes
7
replies
1.5k
views
Forum: Structural Bioinformatics - how popular
structural-bioinformatics
updated 11 months ago by 43k • written 5.7 years ago by • 0
25
votes
7
replies
1.9k
views
6 follow
Forum: What Are The Best Bioinformatics Course Materials [2020]
course teaching
updated 11 months ago by 43k • written 3.4 years ago by 8.7k
7
votes
7
replies
5.0k
views
Forum: Filtering out chromosomes from reference genome
RNA-Seq Alignment
updated 11 months ago by 43k • written 6.0 years ago by 5.3k
5
votes
7
replies
1.8k
views
Forum: Research Bazaar 2018
course workshop
updated 12 months ago by 43k • written 6.4 years ago by 8.4k
18
votes
7
replies
4.5k
views
Forum: Review of the CIGAR string format
alignment
updated 11 months ago by 43k • written 5.6 years ago by 8.6k
4
votes
7
replies
1.5k
views
Forum: Bioinformatics and/or computational biology congress 2019?
congress biology sequencing
updated 11 months ago by 43k • written 5.7 years ago by ★ 2.4k
421 results • Page 3 of 9
Recent Votes
A: Get nonoverlapping regions of two bed files
Get nonoverlapping regions of two bed files
Answer: install package
Answer: How I do lift over a Plink bim file from Hg18 to Hg19.
Answer: joint callset and vcf sorting, unknown TAG issue
Answer: joint callset and vcf sorting, unknown TAG issue
A: what does 'none','unk','incmpl','cmpl' in UCSC refgene tables mean
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Recent Awards • All
Scholar to colindaven 6.4k
Scholar to pjb39 ▴ 200
Popular Question to Jen ▴ 70
Scholar to Pierre Lindenbaum 161k
Popular Question to Michael 54k
Popular Question to Kai_Qi ▴ 130
Popular Question to pramach1 ▴ 40
Recent Replies
Comment: Longest transcript variant per gene by sansan_96 ▴ 90
Thank you very much, success in your projects.
Comment: In IGV is this a heterogeneous mutation or false call? by Tuck898 • 0
Thanks for the input :)
Comment: install package: package ‘gmwm’ is not available for this version of R by Pine ▴ 20
This seems to indicate that the R verison you are using (or packages it depends on) are not compatible with the R version you are using any…
Answer: Tissue-specific DEG analysis with DEseq2 by arctic ▴ 40
Not my area of expertise but GTEx portal seems to offer visual comparison of expression across tissues, maybe checking their pipeline could…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by Pierre Lindenbaum 161k
> I think I am mostly struggling with what would need to be coded to my dataset here and how to run this loop on my set in general. i do…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by ajbarrett98 • 0
Pierre, I am a novice at all of this in general and I have never used Java-based programming before. I may not be able to properly wrangl…
Answer: Practical Haplotype Graph v2 not finding correct paths by pjb39 ▴ 200
There have been a couple of bugs found that affect imputation accuracy, one in build-kmer-index and one in find-paths. The find-paths bug o…
Comment: Output file of satools flagstat empty by Mathew ▴ 100
Hi, In your samtools flagstat, -o specifies the output format. This can be set to 'default', 'json', or 'tsv'. If -o is not specified , t…
Comment: Tissue-specific DEG analysis with DEseq2 by BioinfGuru ★ 1.7k
I wrote an R package (see [rrdr.io][1], and [github][2]) some years ago to calculate tissue specificity from bulk RNAseq based on [this pap…
Comment: joint callset and vcf sorting, unknown TAG issue by Pierre Lindenbaum 161k
> set the Number= to 0 instead of 1; I'm not sure it's a problem. > probably I should also change the Type to Flag ah yes, my bad ! (f…
Comment: Output file of satools flagstat empty by GenoMax 142k
If you posted the entire command line then you did not include `-O $MAPPING/${i}.mapping_stats.txt` in that.
Comment: joint callset and vcf sorting, unknown TAG issue by Matteo Ungaro ▴ 100
@Pierre Lindenbaum I see. I looked up and, although present, the TAG goes like this in both files: `##INFO=<ID=1000gALT,Number=0,Type=Flag,…
Comment: joint callset and vcf sorting, unknown TAG issue by Matteo Ungaro ▴ 100
@Pierre Lindenbaum much appreciated, thanks for the explanation and possible approaches to solve this. I'm not in the position to run `U…
Comment: Tophat multiple or unique mapping criteria by Ruqaiya • 0
> The --b2-mp defines the mismatch penalty: the first number is used when the quality of the base is good, the second when it's bad. If you…
Comment: joint callset and vcf sorting, unknown TAG issue by Pierre Lindenbaum 161k
> Still, I can't understand the Invalid tag name: "1000gALT" the following line is missing in the VCF header: ##INFO=<ID=1000gALT,Num…
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