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319 results • Page 4 of 7
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10
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6
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1.3k
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6 follow
Forum: Pros and cons to do biomedical research in pharmaceutical company
industry career academia
updated 11 months ago by 44k • written 4.3 years ago by ★ 9.4k
6
votes
4
replies
2.5k
views
Forum: Ru/Read Until in Nanopore sequencers
Oxford-Nanopore alignment sequencing
updated 11 months ago by 44k • written 4.3 years ago by ★ 1.7k
6
votes
5
replies
13k
views
Forum: Single-end sequencing versus paired-end
Assembly snp sequencing
updated 11 months ago by 44k • written 4.3 years ago by ▴ 20
6
votes
5
replies
1.9k
views
Forum: Stanford HCP MS Biomedical Informatics vs Johns Hopkins MS Bioinformatics
career
updated 11 months ago by 44k • written 4.3 years ago by ▴ 70
2
votes
0
replies
1.1k
views
Forum: How to Fairly Represent and Interpret Direct-To-Consumer Ancestry Results?
Ancestry chromosome-painting ADMIXTURE
updated 11 months ago by 44k • written 4.3 years ago by 8.2k
4
votes
2
replies
2.2k
views
Forum: wet-lab vs dry-lab scientists
cv language
updated 11 months ago by 44k • written 4.3 years ago by 13k
6
votes
15
replies
1.7k
views
Forum: PhD Bioinformatics on GWAS
SNP GWAS genome PHD
updated 11 months ago by 44k • written 4.3 years ago by ▴ 50
7
votes
2
replies
795
views
Forum: How to follow a particular post on Biostars?
meta
updated 11 months ago by 44k • written 4.5 years ago by ★ 4.0k
7
votes
4
replies
1.5k
views
Forum: Studying for a Bioinformatics degree
sequence R next-gen gene RNA-Seq
updated 11 months ago by 44k • written 4.4 years ago by ▴ 20
2
votes
2
replies
749
views
Forum: Learning RNASeq Analysis using my own DATA that needs to be analyzed
assembly gene RNA-Seq alignment
updated 11 months ago by 44k • written 4.3 years ago by • 0
14
votes
11
replies
6.8k
views
7 follow
Forum: Do you need a deduplication tool for FASTQ data in fastp?
deduplication fastp
updated 11 months ago by 44k • written 5.0 years ago by ★ 2.5k
2
votes
2
replies
949
views
Forum: How can bench biologists transition to be bioinformatics scientist?
transition career biology
updated 11 months ago by 44k • written 4.4 years ago by ▴ 10
0
votes
0
replies
543
views
Forum: Transmart/i2b2 versus PhenoMeNal
transmart PhenoMeNal
updated 11 months ago by 44k • written 4.4 years ago by • 0
2
votes
6
replies
1.0k
views
Forum: Error in posting to Biostars?
meta
updated 11 months ago by 44k • written 4.4 years ago by ▴ 60
1
vote
8
replies
5.4k
views
Forum: Would you use sci-hub's mirror site?
sci-hub
updated 11 months ago by 44k • written 4.4 years ago by • 0
6
votes
5
replies
1.4k
views
7 follow
Forum: What do you think of sci-hub?
sci-hub
updated 11 months ago by 44k • written 4.4 years ago by • 0
1
vote
0
replies
830
views
Forum: Call for clinical bioinformaticians who work with humans (discussion) - germline genome analysis
genetics-tests
updated 11 months ago by 44k • written 4.4 years ago by ★ 2.9k
4
votes
4
replies
1.1k
views
Forum: Kubernetes in Production?
ci-cd webservice kubernetes docker
updated 11 months ago by 44k • written 4.4 years ago by • 0
22
votes
12
replies
1.9k
views
6 follow
Forum: What were the most impactful Bioinformatics papers published this year
papers publications
updated 11 months ago by 44k • written 4.4 years ago by ▴ 520
4
votes
6
replies
2.9k
views
Forum: NGS Data Storage Best Practices (Clinical)
NGS clinical storage
updated 11 months ago by 44k • written 4.4 years ago by ▴ 630
134
votes
65
replies
6.3k
views
11 follow
Forum: Bioinformatics vs. the Climate Crisis
RNA-Seq Climate
updated 11 months ago by 44k • written 4.5 years ago by ▴ 880
7
votes
6
replies
1.8k
views
Forum: Bioinformaticians - Am I on the Right Track?
Career
updated 11 months ago by 44k • written 4.5 years ago by ▴ 80
7
votes
8
replies
1.3k
views
Forum: Guidelines / Limits for Shared Bioinformatics Support
Core Shared-Resources Collaboration
updated 11 months ago by 44k • written 4.5 years ago by 8.2k
8
votes
7
replies
1.4k
views
Forum: Is it okay to pool sample for RNAseq and proteomics study?
RNA-Seq
updated 11 months ago by 44k • written 4.5 years ago by ▴ 10
11
votes
7
replies
6.7k
views
Forum: Using Graphics Processing Units (GPUs) in bioinformatics
algorithm GPU
updated 11 months ago by 44k • written 4.7 years ago by ▴ 310
6
votes
5
replies
964
views
Forum: Tips on: How to organise data on servers
genotype warehouse servers
updated 11 months ago by 44k • written 4.5 years ago by ▴ 110
12
votes
0
replies
2.0k
views
Forum: Free Bioinformatics Courses(Curriculum)
ossu course Curriculum
updated 11 months ago by 44k • written 4.6 years ago by ★ 1.3k
31
votes
16
replies
2.2k
views
8 follow
Forum: What is in your opinion the current state-of-the-art sequencing platform for genomic assembly (Nov 2019)
next-gen-sequencing assembly genome
updated 11 months ago by 44k • written 4.6 years ago by ★ 5.1k
0
votes
0
replies
147
views
Forum: IITM-EBI modelling workshop
ebi iit-madras biomodelling
updated 11 months ago by 44k • written 4.6 years ago by ▴ 10
4
votes
0
replies
911
views
Forum: Help make UMI-tools even better - take our survey
Survey UMI UMI-Tools
updated 11 months ago by 44k • written 4.6 years ago by 19k
34
votes
8
replies
2.7k
views
9 follow
Forum: Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a master of none? How can your CV reflect the diverse skills that you have …
cv industry career
updated 11 months ago by 44k • written 4.6 years ago by ▴ 300
4
votes
3
replies
928
views
Forum: When to ask for rerun from vendors
ngs-vendor
updated 11 months ago by 44k • written 4.7 years ago by ★ 1.9k
4
votes
12
replies
1.5k
views
Forum: publicly available data
arrayexpress GEO SRA
updated 11 months ago by 44k • written 4.6 years ago by ▴ 110
3
votes
8
replies
3.5k
views
6 follow
Forum: SSD or HHD for genome analysis
hardware genome sequencing
updated 11 months ago by 44k • written 4.6 years ago by ▴ 20
2
votes
7
replies
1.2k
views
Forum: Future prospects: NGS vs Gene editing (using CRISPR CAS9, AAVs and similar methods)
NGS CRISPR-Cas9
updated 11 months ago by 44k • written 4.6 years ago by ▴ 170
1
vote
0
replies
787
views
Forum: What are the 10 most exciting developments on the horizon in precision medicine?
precision-medicine
updated 11 months ago by 44k • written 4.7 years ago by 4.2k
21
votes
15
replies
2.1k
views
9 follow
Forum: Working abroad without a PhD
career
updated 11 months ago by 44k • written 4.7 years ago by ★ 1.4k
13
votes
4
replies
1.3k
views
Forum: The shortcoming of shiny app in building webserver
R shiny webserver
updated 11 months ago by 44k • written 4.7 years ago by ▴ 120
1
vote
3
replies
912
views
Forum: The pStacks module of Stacks has been removed?
software-error
updated 11 months ago by 44k • written 4.7 years ago by ▴ 20
3
votes
3
replies
1.1k
views
Forum: Large Multi-omics Project -- Dev Approach
snp RNA-Seq sequencing
updated 11 months ago by 44k • written 4.8 years ago by ▴ 10
4
votes
5
replies
1.4k
views
7 follow
Forum: Career related query
MSc career
updated 12 months ago by 44k • written 5.4 years ago by ▴ 10
12
votes
4
replies
1.6k
views
Forum: Bioinformatics and biotechnology market in future.
genome next-gen
updated 11 months ago by 44k • written 4.8 years ago by • 0
3
votes
0
replies
1.1k
views
Forum: Good books on application of Machine Learning in Bioinformatics
book machine-learning
updated 11 months ago by 44k • written 4.8 years ago by ▴ 180
0
votes
2
replies
1.3k
views
Forum: What should I choose between a thesis and a project for masters in bioinformatics?
thesis project
updated 11 months ago by 44k • written 4.8 years ago by ▴ 70
4
votes
0
replies
1.2k
views
Forum: Plotting Ensembl gene name changes between versions
R ensembl
updated 11 months ago by 44k • written 4.8 years ago by ▴ 600
39
votes
21
replies
14k
views
10 follow
Forum: Orientation of PE reads a review of --fr --ff and --rf meanings
RNA-Seq
updated 12 months ago by 44k • written 5.6 years ago by 8.6k
1
vote
2
replies
963
views
Forum: What Are The Big Problems/Current Trends In Proteomics?
proteomics sequencing
updated 11 months ago by 44k • written 4.8 years ago by • 0
0
votes
4
replies
2.2k
views
Forum: Multiple Sequence Alignment Applications
snp
updated 11 months ago by 44k • written 4.8 years ago by • 0
4
votes
13
replies
1.7k
views
Forum: Looking for Participants: Meenta NovaSeq RunShare Beta
RunShare next-gen NovaSeq
updated 11 months ago by 44k • written 4.8 years ago by ▴ 10
2
votes
5
replies
1.5k
views
Forum: Looking for co-author with Bioinformatics background for paper using Machine Learning in Biology
neural-networks lncRNA RNN FEELnc
updated 12 months ago by 44k • written 5.7 years ago by ▴ 20
319 results • Page 4 of 7
Recent Votes
Comment: log2 fold change in RNA-seq analysis
Comment: log2 fold change in RNA-seq analysis
Answer: Ideal PC configurations and operating system for bioinformatics laboratory
correct way of analyzing cell proportions in singlecell data
Comment: How to interpret this plotMDS of three disease clusters?
gseGO: no term enriched under specific pvalueCutoff
Answer: Error with BiocParallel. No barcodes files found
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Recent Awards • All
Teacher to dsull ★ 6.1k
Popular Question to adarsh_pp ▴ 40
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Recent Replies
Answer: Z score by Akash D ▴ 50
I made this. Z scored on log2FC? will anyone support me on this? 3 groups A,B,C
Comment: log2 fold change in RNA-seq analysis by i.sudbery 19k
There is no such thing as a fold change of -2. Fold change is expression_in_condition_A/expresssion_in_condition_B as expression is a…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by i.sudbery 19k
DE with 100s of samples (particulalry if your experiemental design is more complex than 2 condition DE) can stretch consumer grade hardware…
Comment: Error with BiocParallel. No barcodes files found by NTerway • 0
Thank you for your help! I will try this out. I am trying to implement a collaborator's pipeline on my data and they only use SCE, scran an…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by ATpoint 82k
Once you have the counts any n is possible on a regular analysis-grade laptop or workstation. Even hundreds of samples. It's really the pre…
Comment: Error with BiocParallel. No barcodes files found by ATpoint 82k
You just tell the function to remove the prefix for you. Not on the actual file. Then you can add this information to the SCE, like `sce$da…
Comment: log2 fold change in RNA-seq analysis by May Ling • 0
Thank you for your response. I apologize if my understanding is incomplete. I would like to ask: if I have a fold change of -2, how can I c…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by i.sudbery 19k
Yeah, a standard 3x3 bulk experiement is very analysable on pretty much most good consumer laptops these days.
Comment: Error with BiocParallel. No barcodes files found by NTerway • 0
Thanks for the explanation! If I remove the prefix (GSM3972009_69_) then I will lose the sample annotation and cannot track them. I am more…
Comment: Unexpected read length from NGS by ATpoint 82k
Seconding this. Just ask them.
Answer: Error with BiocParallel. No barcodes files found by ATpoint 82k
The function assumes simply barcodes.tsv(.gz), genes.tsv(.gz) and matrix.mtx(.gz), without additional pre- or suffixes by default. You can …
Comment: Free AI for R programming by GenoMax 142k
Try: https://ai.tinybio.cloud/
Comment: How to interpret this plotMDS of three disease clusters? by ATpoint 82k
arrayWeights is imo always a good idea with human (or generally large) cohorts. What you can also do is to use something like sva to estima…
Comment: Cellranger-multi : Demultiplexing and Analyzing 5’ Immune Profiling Libraries Po by GenoMax 142k
Not what you want to hear but it is possible that the Ab data is not good quality as the cellranger message says (assuming everything ran p…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by ATpoint 82k
Bulk RNA-seq is way less intensive in every regard than single-cell. Whatever you buy, be sure it's upgradable, meaning, no Mac :)
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