Limit : all time
all time today this week this month this year
1,000 results • Page 8 of 20
Sort: replies
Rank Views Votes Replies
2
votes
28
replies
7.7k
views
Memory use in indexing
Assembly software error
updated 5.8 years ago by 43k • written 6.0 years ago by ▴ 710
6
votes
28
replies
3.0k
views
6 follow
-bash: ./HeatMap.R: cannot execute binary file. Why is this?
Heatmapscript mapping Rnaseq Rpm
5.6 years ago by jaqx008 ▴ 110
11
votes
28
replies
4.1k
views
ChIP-Seq samples : FASTQ quality control
ChIP-Seq QC
6.1 years ago by erwan.scaon ▴ 940
33
votes
28
replies
12k
views
9 follow
Is There Any Reference Exome ?
exome next-gen-sequencing
updated 17 months ago by 43k • written 13.1 years ago by 18k
60
votes
28
replies
8.3k
views
27 follow
Forum: Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 14 months ago by 43k • written 9.6 years ago by 100k
14
votes
28
replies
12k
views
11 follow
Split fastq according to barcodes
fastq demultiplexing scRNA-seq
updated 2.3 years ago by ▴ 50 • written 5.4 years ago by ▴ 30
32
votes
28
replies
6.1k
views
7 follow
How to make bash script operate fast for a 13gb VCF.gz file with 900000 rows and 10000 fields?
vcf bash
updated 5.8 years ago by 161k • written 5.9 years ago by ▴ 170
9
votes
28
replies
6.1k
views
Getting in frame stop codons from fasta
python
updated 7.6 years ago by 47k • written 7.6 years ago by ▴ 700
12
votes
28
replies
9.3k
views
illumina EPIC array support by R packages?
methylation minfi champ rnbeads
updated 4.9 years ago by 8.2k • written 7.9 years ago by ▴ 140
21
votes
28
replies
5.2k
views
How to combine 2 incomplete GTF
Cufflinks Cuffcompare GTF Cuffmerge Merge
3.0 years ago by Rafael Soler ★ 1.2k
39
votes
28
replies
11k
views
10 follow
How Much Does It Cost To Align A Flowcell In The Cloud?
cloud
3 months ago by Jeremy Leipzig 22k
38
votes
28
replies
17k
views
11 follow
Alternatives To Galaxy For Wrapping Command Line Tools In A Graphical User Interface?
galaxy command-line
updated 24 months ago by 43k • written 12.5 years ago by ★ 1.3k
43
votes
28
replies
8.0k
views
13 follow
Hardware Needed To Analyse Microarray Data With R/Bioconductor
hardware microarray analysis r bioconductor
updated 12.7 years ago by ▴ 30 • written 13.3 years ago by ▴ 70
6
votes
28
replies
25k
views
How to do scaling in ComplexHeatmap
ChIP-Seq ComplexHeatmap R edgeR
updated 5.0 years ago by 11k • written 5.0 years ago by ▴ 80
63
votes
28
replies
4.1k
views
11 follow
Forum: Bioinformatics analyses & errors: need for better post-publication tools?
next-gen RNA-Seq
updated 13 months ago by 43k • written 8.0 years ago by ★ 1.2k
17
votes
28
replies
4.1k
views
collapsing transcript expression to gene-level expression
FeatureCounts BAM RNA-Seq
5.2 years ago by zizigolu ★ 4.3k
4
votes
28
replies
2.4k
views
Questions About How to Plot NOMe-seq Plot
next-gen ChIP-Seq BS-seq
5.4 years ago by Ashley ▴ 90
17
votes
28
replies
4.6k
views
First Intron extraction from ensembl
sequence gene
updated 2.6 years ago by 43k • written 9.9 years ago by ▴ 130
15
votes
28
replies
8.7k
views
BAM to FASTQ
command line sequencing
updated 7.4 years ago by ▴ 290 • written 7.4 years ago by ▴ 70
72
votes
28
replies
6.4k
views
10 follow
Forum: Bioinformatics commercial services as a risk factor for scientific misconduct
commercial-services ethics misconduct
updated 22 months ago by 43k • written 9.3 years ago by ▴ 90
8
votes
28
replies
29k
views
Trimmomatic job script to run on multiple pair end read file
RNA-Seq
updated 5.0 years ago by 5.8k • written 6.3 years ago by ▴ 460
49
votes
28
replies
28k
views
12 follow
Trimming A Fastq File Representing Rna-Seq Data
fastq RNA-seq
updated 13 months ago by 43k • written 12.1 years ago by ★ 1.3k
17
votes
28
replies
25k
views
15 follow
Extract Base Based On Position From Bam File
mpileup samtools
updated 22 months ago by ★ 2.7k • written 11.9 years ago by ▴ 170
5
votes
28
replies
14k
views
convert fasta dna files to protein
alignment
7.2 years ago by genya35 ▴ 40
18
votes
27
replies
19k
views
20 follow
Where Can I Download Vcf Files For Publicly Available Data?
vcf snp
updated 14 months ago by 43k • written 12.4 years ago by ▴ 640
153
votes
27
replies
11k
views
21 follow
The Best Question To Ask In A Bioinformatics Seminar
subjective
updated 13.3 years ago by ★ 1.1k • written 13.4 years ago by 28k
3
votes
27
replies
2.6k
views
7 follow
Forum: What server do you use?
HPC AWS
updated 12 months ago by 43k • written 5.8 years ago by ★ 1.9k
197
votes
27
replies
35k
views
20 follow
Forum: Bioinformatics Cartoon
bioinformatics
updated 10 months ago by 43k • written 12.4 years ago by ★ 2.3k
15
votes
27
replies
3.3k
views
Remove gap from files
alignment sequence
updated 6.7 years ago by ▴ 380 • written 6.7 years ago by ▴ 40
5
votes
27
replies
5.0k
views
sambamba markdup command not working
sambamba markdup
updated 7.1 years ago by 5.7k • written 7.1 years ago by ▴ 180
17
votes
27
replies
15k
views
14 follow
How to remove Bad Nucleotides represented by "N" from FASTA file by using UNIX?
sequence
updated 2.4 years ago by • 0 • written 6.4 years ago by ▴ 30
10
votes
27
replies
2.7k
views
6 follow
Sequence reads and complete assembly
assembly sequencing sequence
updated 5.6 years ago by ▴ 60 • written 5.6 years ago by ▴ 10
29
votes
27
replies
8.7k
views
ChAMP error in EPIC data import
methylation ChAMP EPIC idat R
updated 6.9 years ago by ▴ 50 • written 7.0 years ago by ▴ 70
49
votes
27
replies
7.4k
views
10 follow
Forum: Possible augmented reality tools for bioinformatics and current problems
visualization 3D augmented-reality
updated 13 months ago by 43k • written 8.6 years ago by ▴ 90
9
votes
27
replies
7.7k
views
How do I use Glimmer 3.02?
sequencing
updated 5.3 years ago by • 0 • written 6.2 years ago by ▴ 50
26
votes
27
replies
2.2k
views
10 follow
Forum: Determining computer time required
computer hpc time
updated 4 months ago by ★ 6.0k • written 4 months ago by ▴ 40
61
votes
27
replies
27k
views
18 follow
Links To Good Next Gen Sequence Analysis Training Courses And Centres
next-gen sequencing analysis workshops training
updated 2.2 years ago by 43k • written 12.8 years ago by ★ 2.8k
7
votes
27
replies
2.7k
views
quality read software
sequence
updated 7.2 years ago by 20 • written 7.6 years ago by ▴ 40
53
votes
27
replies
4.5k
views
11 follow
Should General Programming Questions Actually Be Posted To Biostar?
meta biostars
updated 15 months ago by 43k • written 12.9 years ago by ★ 1.6k
82
votes
27
replies
21k
views
12 follow
ATAC-seq sample normalization
ChIP-Seq atac-seq normalization
updated 6 weeks ago by • 0 • written 4.4 years ago by ▴ 250
7
votes
27
replies
2.9k
views
error while downloading taxonomy using E-utilities
software error bash ncbi amplicon sequencing
updated 4.8 years ago by 142k • written 4.8 years ago by ▴ 460
73
votes
27
replies
28k
views
16 follow
Tutorial: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
RNA-seq
updated 5 months ago by • 0 • written 10.3 years ago by 100k
28
votes
27
replies
15k
views
9 follow
Extracting A Subset Of Sequences From A Fastq File (Biopython Speed)
biopython python fastq next-gen-sequencing
updated 6 months ago by 43k • written 14.1 years ago by 4.6k
12
votes
27
replies
7.6k
views
6 follow
Command For Merging/Joining
multiple-alignment
updated 10.2 years ago by ▴ 700 • written 10.2 years ago by • 0
298
votes
27
replies
45k
views
33 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq sequencing papers
updated 22 months ago by 43k • written 8.3 years ago by ★ 2.4k
80
votes
27
replies
56k
views
20 follow
How To Write Data In A Granges Object To A Bed File.
bed
updated 20 months ago by ▴ 70 • written 10.4 years ago by ▴ 190
6
votes
27
replies
5.0k
views
7 follow
trinitry Virusfinder error message no contigs
virus
updated 6.1 years ago by ▴ 10 • written 7.6 years ago by ▴ 110
17
votes
27
replies
5.1k
views
How to show both edgeR and deseq2 results in a single volcano plot; highliting overlaps
RNA-Seq R DEG volcano plot
updated 5.0 years ago by 11k • written 6.0 years ago by ★ 3.4k
42
votes
27
replies
5.3k
views
12 follow
What Do You Think Microsoft Biology Foundation?
updated 19 months ago by 43k • written 13.0 years ago by ▴ 820
27
votes
27
replies
10k
views
6 follow
How To Detect And Query Poly-Allelic Snps?
snp allele biomart dbsnp
updated 6 months ago by 43k • written 14.2 years ago by 54k
1,000 results • Page 8 of 20
Recent Votes
Comment: Duplicated sequence samtools
Answer: Duplicated sequence samtools
Answer: Duplicated sequence samtools
Answer: How to add Ensembl id to cluster.markers in Seurat
Sequence alignment on split read event such as inversion, duplication and complex nested events.
plotting trees in R: node labels from nexus tree files
Interpreting the Jackstraw plot of Seurat
Recent Locations • All
United States, 2 minutes ago
Istanbul, Turkey, 5 minutes ago
Belgium, 8 minutes ago
Belgium, 10 minutes ago
United States, 13 minutes ago
United Kingdom, 14 minutes ago
United States, 15 minutes ago
Recent Awards • All
Popular Question to carlopecoraro2 ★ 2.5k
Popular Question to scideas ▴ 30
Popular Question to Muhammad • 0
Popular Question to synat.keam ▴ 100
Scholar to jv ★ 1.8k
Popular Question to syedahamdani94 • 0
Popular Question to mohammadhassanj ▴ 260
Recent Replies
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by Pierre Lindenbaum 161k
> Cannot read non-existent file: file:///local/home/User/VCF_Filtering/biostar.code your file doesn't exist, is at the wrong place etc.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by ajbarrett98 • 0
Hi Pierre, I am attempting to run this code and am running into this error: (jvar) $ jvarkit vcffilterjdk -f biostar.code Dart_VCF2_Or…
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by ATpoint 82k
I cannot give a precise answer, as ML is not my field, but generally, why don't you apply the method to pseudobulks of the exact single-cel…
Answer: geom_bar issue in ggplot2 with xlim() by ATpoint 82k
https://stackoverflow.com/questions/10365167/geom-bar-bars-not-displaying-when-specifying-ylim
Comment: What marks a De-Novo Genome assembly as FAILED? by Umer ▴ 50
Yes. We are sequencing 45 different samples with illumina. 12 of these are also going to be sequenced with Nanopore (for hybrid assembly). …
Comment: HGVS Nomenclature of Multiple Indels found in Cis by LauferVA 4.2k
how has this code progressed? is it publically available? would you want to work together?
Comment: Design for complex RNA-Seq experiment using Deseq2 by Ezequiel • 0
I completely agree with most points. The PCA shows that the biggest driver of difference is the patients themselves, with PRE and POST time…
Comment: Add stats to the plot by marco.barr ▴ 130
Hi, you can add statistical annotations using `ggpubr` function `stat_pvalue_manual `. You need to make sure you calculate the p-values fir…
Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from by ATpoint 82k
Use everything before the whitespace in list.txt, for example `A00869:294:HCW57DSXY:2:1101:3929:1000` and not `A00869:294:HCW57DSXY:2:1101:…
Answer: CellRanger output more cells than specified using --force-cells? Why? by scideas ▴ 30
I actually had this same issue with CellRanger v7- turns out that since you have 2 species in your mapping reference, CellRanger is forcing…
Answer: Checking chromosome builds for genotyping data by Muhammad • 0
Assume you have genotype data in Plink format. (G.bed, G.bim, G.fam) Download some reference panel data in Plink format (R.bed, R.bim, R.f…
Comment: Error in CIBERSORTx ($ operator is invalid for atomic vectors) by nguyenn6 • 0
did you ever figure it out? i'm having the same issue.
Comment: Traveler with Infernal mapping failed by anton.i.petrov • 0
Hi Larissa! I am the lead developer of R2DT and I've just noticed this question. Could you please email help@r2dt.bio with your input seque…
Comment: constructing pangenome through psvcp by analyst ▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by GenoMax 142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Traffic: 1262 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6