299
votes
122
replies
33k
views
29 follow
334
votes
92
replies
241k
views
58 follow
updated 9 months ago by
kalavattam
▴
190
•
written 13.3 years ago by
Biomed
5.0k
164
votes
70
replies
61k
views
34 follow
163
votes
64
replies
88k
views
39 follow
124
votes
56
replies
103k
views
24 follow
328
votes
54
replies
64k
views
45 follow
85
votes
49
replies
10k
views
31 follow
updated 6 months ago by
Ram
44k
•
written 14.2 years ago by
Jarretinha
3.4k
185
votes
45
replies
32k
views
27 follow
updated 7 months ago by
Ram
44k
•
written 14.2 years ago by
Giovanni M Dall'Olio
28k
185
votes
44
replies
83k
views
30 follow
43
votes
44
replies
6.2k
views
14 follow
updated 7 months ago by
steve
★
3.5k
•
written 7 months ago by
l.gallucci
▴
10
171
votes
41
replies
98k
views
27 follow
18
votes
41
replies
3.7k
views
6 follow
updated 5 months ago by
Joe
21k
•
written 7 months ago by
sil_bioinfo
▴
40
226
votes
39
replies
289k
views
33 follow
78
votes
38
replies
33k
views
15 follow
updated 11 weeks ago by
nickp60
▴
60
•
written 7.9 years ago by
andrew.j.skelton73
6.6k
10
votes
37
replies
13k
views
21 follow
updated 6 weeks ago by
aziz.hammou
•
0
•
written 8.9 years ago by
kevluv93
▴
170
10
votes
36
replies
5.9k
views
updated 5 weeks ago by
Ram
44k
•
written 5.8 years ago by
Kristin Muench
▴
620
57
votes
35
replies
15k
views
9 follow
updated 7 months ago by
Kevin Blighe
88k
•
written 6.3 years ago by
hellbio
▴
520
40
votes
35
replies
13k
views
10 follow
5
votes
35
replies
3.8k
views
updated 10 months ago by
Jordan M Eizenga
▴
460
•
written 11 months ago by
anivlete
•
0
15
votes
34
replies
16k
views
10 follow
172
votes
34
replies
26k
views
29 follow
103
votes
34
replies
114k
views
23 follow
10
votes
33
replies
3.9k
views
120
votes
31
replies
200k
views
17 follow
updated 6 months ago by
Ram
44k
•
written 14.1 years ago by
Eric Normandeau
11k
105
votes
31
replies
95k
views
18 follow
147
votes
31
replies
138k
views
26 follow
updated 10 months ago by
Ram
44k
•
written 12.3 years ago by
Anima Mundi
★
2.9k
11
votes
31
replies
15k
views
6 follow
102
votes
30
replies
62k
views
25 follow
updated 7 months ago by
Ram
44k
•
written 14.2 years ago by
Biostar User
★
1.0k
58
votes
30
replies
11k
views
13 follow
updated 6 months ago by
Ram
44k
•
written 14.1 years ago by
Khader Shameer
18k
4
votes
29
replies
11k
views
6 follow
16
votes
29
replies
1.9k
views
updated 3 months ago by
Mensur Dlakic
★
27k
•
written 3 months ago by
anasjamshed
▴
120
20
votes
29
replies
2.6k
views
6 follow
updated 7 months ago by
Pierre Lindenbaum
162k
•
written 7 months ago by
Axzd
▴
70
124
votes
29
replies
7.4k
views
18 follow
updated 6 months ago by
Ram
44k
•
written 14.2 years ago by
Simon Cockell
7.4k
39
votes
28
replies
11k
views
10 follow
3 months ago by
Jeremy Leipzig
22k
43
votes
28
replies
5.7k
views
13 follow
updated 6 months ago by
Ram
44k
•
written 14.1 years ago by
Eric Normandeau
11k
29
votes
28
replies
35k
views
11 follow
updated 20 days ago by
thomas.heigl.ibk
•
0
•
written 12.8 years ago by
Bioscientist
★
1.7k
27
votes
27
replies
10k
views
6 follow
82
votes
27
replies
21k
views
12 follow
28
votes
27
replies
15k
views
9 follow
77
votes
26
replies
121k
views
15 follow
81
votes
26
replies
13k
views
17 follow
20
votes
26
replies
3.3k
views
updated 9 months ago by
Joe
21k
•
written 4.9 years ago by
Joel Wallenius
▴
210
96
votes
26
replies
31k
views
15 follow
updated 6 months ago by
Ram
44k
•
written 14.1 years ago by
Pierre Lindenbaum
162k
3
votes
26
replies
2.1k
views
6 follow
38
votes
26
replies
19k
views
16 follow
written 8.3 years ago by
biostart
▴
370
105
votes
26
replies
43k
views
23 follow
updated 8 months ago by
zx8754
11k
•
written 11.4 years ago by
henryvuong
▴
810
69
votes
25
replies
7.1k
views
16 follow
updated 6 months ago by
Ram
44k
•
written 14.2 years ago by
Dave Gerrard
▴
190
6
votes
25
replies
39k
views
14 follow
updated 11 months ago by
13554221497
•
0
•
written 6.2 years ago by
ARich
▴
130
38
votes
25
replies
9.2k
views
13 follow
updated 8 months ago by
Ram
44k
•
written 8.1 years ago by
waqasnayab
▴
250
36
votes
25
replies
33k
views
15 follow
Recent Votes
Recent Locations •
All
Spain, 1 minute ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 1 minute ago
United States, 2 minutes ago
Hong Kong, 3 minutes ago
India, 4 minutes ago
Japan, 5 minutes ago
Italy, 6 minutes ago
Recent Awards •
All
Popular Question to
liyong
▴
80
Popular Question to
Shicheng Guo
★
9.4k
Popular Question to
reza
▴
300
Popular Question to
mhale
▴
20
Teacher to
Ashutosh Pandey
12k
Recent Replies
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
by
i.sudbery
19k
It very much depends on whether the OP does want/need to do the CellRanger runs locally or not. Doesn't really matter if its only occasion…
Comment: log2 fold change in RNA-seq analysis
by
Mensur Dlakic
★
27k
Everything is already explained on this page, just read everything already written above. Specifically, [**this comment**][1].
[1]: htt…
Answer: log2 fold change in RNA-seq analysis
by
May Ling
•
0
Good day everyone,
Sorry I found a bit confusing and would appreciate if I could clarify on the calculation. I am using DESeq. My desire…
Answer: GWAS Phenotypes
by
韩雨
•
0
In my opinion, the basis of the question is to solve whether the phenotype is regulated by genetics.
In the aspect of genetic, the estima…
Answer: Classic threshold for log2 fold change in RNA-seq experiment
by
May Ling
•
0
Good day everyone,
Sorry I found a bit confusing and would appreciate if I could clarify on the calculation. I am using DESeq. My desire…
Comment: some error in building kraken2 database
by
ahmet
•
0
Were you able to fix this issue? I'm also trying to add external species to krakendb
Comment: Z score
by
ATpoint
82k
logFCs are a bit difficult to cluster I think, because fold changes without stats attached to it are meaningless. They can be very big, due…
Comment: Z score
by
Akash D
▴
40
Ok. However, if i perform it on log2FC, there wont be any control samples visible in my heatmap.
Your answer is perfect.
Comment: Z score
by
ATpoint
82k
You can apply Z-scores on whatever you want, but it must make sense and depends on what you want to do. What is the context? See for exampl…
Answer: Z score in RNAseq
by
Akash D
▴
40
Can Z score be applied on log2FC and then visualized?
Alternatively,
Can log2FC be converted to Z scores and then visualized as heatmap?
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
by
ATpoint
82k
Just for comparison, I deal with scRNA-seq daily and my workstation is a 12700k i7 with 128GB RAM and even this is actually more than I nee…
Answer: Ideal PC configurations and operating system for bioinformatics laboratory
by
colindaven
6.4k
- As others have said, 1-2 workstations are probably the way to go.
- A Linux OS like Ubuntu is probably easiest and has best docs
- RA…
Comment: How to get the ratio of allele counts from GATK derived VCF file?
by
anikcropscience
▴
230
Ok, thank you for the reply. I will check out the DP field then.
Comment: Alternatives To Liftover
by
Thanujay S
•
0
Hey! Would you consider building an API for the same? Is that something you have planned?
Traffic: 2708 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6