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460 results • Page
3 of 10
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13
votes
11
replies
4.7k
views
Forum:
Anyone using Ubuntu on Windows (WSL)?
ubuntu
wsl
updated 11 months ago by
Ram
43k • written 5.8 years ago by
Batu
▴ 250
13
votes
4
replies
1.3k
views
Forum:
The shortcoming of shiny app in building webserver
R
shiny
webserver
updated 11 months ago by
Ram
43k • written 4.7 years ago by
harrypotterandsbt
▴ 120
13
votes
18
replies
3.2k
views
6 follow
Forum:
Bioinformatics independent study group
Proteomic
RNA-Seq
Genomic
updated 11 months ago by
Ram
43k • written 6.7 years ago by
Leite
★ 1.3k
13
votes
7
replies
1.3k
views
Forum:
Feedback for my python package to combine results from multiple classifiers
annotation
protein
python
machine-learning
updated 10 months ago by
Ram
43k • written 3.7 years ago by
fred.s.kremer
▴ 110
13
votes
7
replies
9.4k
views
Forum:
The struggle between fastq and fastq.gz, compressed v/s uncompressed file formats
fastq
updated 11 months ago by
Ram
43k • written 6.9 years ago by
lakhujanivijay
5.8k
13
votes
6
replies
1.2k
views
Forum:
To Cloud or Not to Cloud - Privacy implications of genetic data sharing
security
diagnostics
DNA-Seq
updated 11 months ago by
Ram
43k • written 4.8 years ago by
David Langenberger
11k
12
votes
4
replies
2.0k
views
Forum:
Update: CRISPR off-target effects causing unexpected mutations - good science or media hype?
off-target
CRISPR
updated 11 months ago by
Ram
43k • written 6.9 years ago by
BioinfGuru
★ 1.7k
12
votes
12
replies
3.0k
views
Forum:
Programming interview via Skype
programming-test
interview
updated 11 months ago by
Ram
43k • written 5.9 years ago by
padgaus
▴ 50
12
votes
7
replies
7.1k
views
Forum:
Differences between SMART-seq2, SMART-seq3, and 10x
cell
smartseq
UMIs
single
10x
updated 5 weeks ago by
dsull
★ 6.0k • written 2.7 years ago by
hamarillo
▴ 70
12
votes
12
replies
1.4k
views
7 follow
Forum:
Who qualify as a world class bioinformatician as seen in job ads
world-class
bioinformatician
qualification
updated 11 months ago by
Ram
43k • written 4.1 years ago by
scolobs
• 0
12
votes
2
replies
3.0k
views
Forum:
List of genome annotation tools (>140)
gene
genome
updated 11 months ago by
Ram
43k • written 4.7 years ago by
Juke34
8.6k
12
votes
4
replies
1.6k
views
Forum:
Bioinformatics and biotechnology market in future.
genome
next-gen
updated 11 months ago by
Ram
43k • written 4.7 years ago by
mona11224
• 0
12
votes
14
replies
2.5k
views
8 follow
Forum:
Recovering bam files after unknown deletion in the storage
photorec
bam
sequencing
written 4.9 years ago by
Gabriel Wajnberg
▴ 70
12
votes
0
replies
1.9k
views
Forum:
Free Bioinformatics Courses(Curriculum)
ossu
course
Curriculum
updated 11 months ago by
Ram
43k • written 4.5 years ago by
Leite
★ 1.3k
12
votes
5
replies
2.6k
views
Forum:
We Need Your Input! Help Get Information For The Informatics Community And Get A Free Gift Card!
algorithm
ngs
updated 10 months ago by
Ram
43k • written 10.9 years ago by
BioPlanet
▴ 30
11
votes
7
replies
6.6k
views
Forum:
Using Graphics Processing Units (GPUs) in bioinformatics
algorithm
GPU
updated 11 months ago by
Ram
43k • written 4.7 years ago by
Denis
▴ 310
11
votes
5
replies
4.8k
views
Forum:
Bioinformatics Workstation Suggestions
RNA-Seq
next-gen
workstation
updated 11 months ago by
Ram
43k • written 4.9 years ago by
akh22
▴ 110
11
votes
9
replies
2.3k
views
Forum:
Survey: help define Gencode and NCBI primary transcripts
refseq
ensembl
gencode
ncbi
transcript
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Emily
23k
11
votes
8
replies
1.4k
views
6 follow
Forum:
How to write a review article in bioinformatics
article
review
updated 8 months ago by
Ram
43k • written 9 months ago by
joey
▴ 10
11
votes
8
replies
1.7k
views
Forum:
Bioinformatics cores pricing model
pricing-models
core
Bioinformatics-services
updated 11 months ago by
Ram
43k • written 5.1 years ago by
Bioinfo_2006
▴ 160
11
votes
5
replies
1.5k
views
Forum:
What bioinformatic training?
training
RNA-Seq
illumina
updated 11 months ago by
Ram
43k • written 4.9 years ago by
Peter Horbatz
▴ 150
11
votes
9
replies
2.5k
views
7 follow
Forum:
Feature Selection and Dimensionality Reduction in 10X scRNA-seq data
software-error
pca
scRNA-seq
updated 11 months ago by
Ram
43k • written 4.3 years ago by
ATpoint
82k
11
votes
6
replies
1.6k
views
Forum:
Posting a preprint paper on biostars.com
preprint
updated 11 months ago by
Ram
43k • written 5.5 years ago by
statfa
▴ 760
11
votes
13
replies
4.5k
views
6 follow
Forum:
NGS Data storage solutions for small organisations or big labs
big-data
HTS
storage
NGS
metagenomics
updated 11 months ago by
Ram
43k • written 4.9 years ago by
bioinfo
▴ 830
11
votes
5
replies
6.5k
views
Forum:
Slurm, Son of Grid Engine, Mesos, and Hadoop YARN vs HTCondor and Torque
PBS
HPC
SDSC
Torque
updated 11 months ago by
Ram
43k • written 5.8 years ago by
Shicheng Guo
★ 9.4k
10
votes
15
replies
2.1k
views
Forum:
How should reference genome fasta files be distributed by UCSC?
reference-genome
fasta
freeze
ucsc-genome-browser
updated 11 months ago by
Jeremy Leipzig
22k • written 14 months ago by
Maximilian Haeussler
★ 1.6k
10
votes
6
replies
1.3k
views
6 follow
Forum:
Pros and cons to do biomedical research in pharmaceutical company
industry
career
academia
updated 11 months ago by
Ram
43k • written 4.2 years ago by
Shicheng Guo
★ 9.4k
10
votes
7
replies
2.2k
views
Forum:
How to learn bioinformatics?
learning
updated 3 months ago by
Samuel Lampa
★ 1.3k • written 23 months ago by
sakichwan
▴ 20
10
votes
6
replies
2.2k
views
Forum:
How to acknowledge in the paper a reference genome that hasn't been published yet?
reference
paper
updated 11 months ago by
Ram
43k • written 5.7 years ago by
ciemanek
▴ 140
10
votes
8
replies
3.1k
views
6 follow
Forum:
Cancer research for computer science student
cancer
research
computer-science
updated 6 months ago by
SANDHYA
• 0 • written 6.5 years ago by
mhasa006
▴ 70
10
votes
4
replies
5.8k
views
Forum:
Bioinformatics: Which language should I learn
programming
updated 11 months ago by
Ram
43k • written 5.0 years ago by
MEHAR ALI RAZA
• 0
10
votes
10
replies
1.7k
views
Forum:
Doctor looking fertility for a collaborator for text mining on pubmed
text-mining
fertility
pubmed
updated 11 months ago by
Ram
43k • written 6.5 years ago by
jeromebouaziz
• 0
10
votes
7
replies
2.0k
views
Forum:
Is trimming always better?
RNA-Seq
QC
trimmomatic
trimming
updated 11 months ago by
Ram
43k • written 4.9 years ago by
Mozart
▴ 330
10
votes
11
replies
4.2k
views
7 follow
Forum:
What made you interested in Bioinformatics?
career
updated 11 months ago by
Ram
43k • written 6.4 years ago by
Hussain Ather
▴ 990
9
votes
8
replies
5.1k
views
Forum:
R or python, which one do you prefer in analysing scRNAseq datasets?
R
RNA-Seq
python
updated 11 months ago by
Ram
43k • written 6.0 years ago by
wt215
• 0
9
votes
6
replies
1.9k
views
6 follow
Forum:
GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl
bug
GTF
updated 7 months ago by
ATpoint
82k • written 17 months ago by
dlaehnemann
▴ 30
9
votes
10
replies
1.3k
views
6 follow
Forum:
What's more clear, loops or functions?
R
updated 11 months ago by
Ram
43k • written 5.6 years ago by
DriesB
▴ 110
9
votes
6
replies
1.5k
views
Forum:
How to start my career in Bioinformatics
career
updated 10 months ago by
Ram
43k • written 3.7 years ago by
Sashi G
▴ 10
9
votes
14
replies
2.4k
views
Forum:
MS Bioinformatics Project
assembly
sequencing
alignment
R
SNP
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Moneeb Bajwa
▴ 10
9
votes
1
reply
7.3k
views
Forum:
Master in statistics or bioinformatics
masters
career
statistics
updated 11 months ago by
Ram
43k • written 10.0 years ago by
indeci
▴ 50
9
votes
6
replies
1.4k
views
Forum:
New Aligner Tool - Would you be interested in this ?
ChIP-Seq
alignment
Assembly
next-gen
rna-seq
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Andrew_MacGregor
▴ 30
9
votes
10
replies
17k
views
8 follow
Forum:
Open Source Bioinformatics projects for beginners
Open-Source
Beginners
updated 3 months ago by
Saransh
• 0 • written 6.3 years ago by
Eugenia84
▴ 40
9
votes
11
replies
3.3k
views
7 follow
Forum:
Fields with biggest demand for bioinformatics?
career
updated 11 months ago by
Ram
43k • written 5.3 years ago by
BioinformaticsLad
▴ 200
9
votes
3
replies
3.2k
views
Forum:
Why doesn't Swift have an active bioinformatics community project like rust-bio, Biogo and BioJulia?
Swift
updated 11 months ago by
Ram
43k • written 6.3 years ago by
stevin
• 0
9
votes
10
replies
1.7k
views
Forum:
Brainstorming: applying bioinformatics NOT to public field. Ideas and perspectives
applied-sciences
data-analysis
updated 11 months ago by
Ram
43k • written 6.1 years ago by
lessismore
★ 1.3k
8
votes
9
replies
3.7k
views
8 follow
Forum:
How can I contribute to the Bioinformatics community as a Software Engineer
software-engineer
updated 11 months ago by
Ram
43k • written 5.5 years ago by
Chen Sun
★ 1.1k
8
votes
7
replies
1.4k
views
Forum:
Is it okay to pool sample for RNAseq and proteomics study?
RNA-Seq
updated 11 months ago by
Ram
43k • written 4.4 years ago by
sha_6p
▴ 10
8
votes
4
replies
2.7k
views
Forum:
SNP calling in 2018
variant
gatk
SNP
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Picasa
▴ 640
8
votes
4
replies
1.8k
views
Forum:
Unsolved Topics in Bioinformatics
bioinformatics
updated 11 months ago by
Ram
43k • written 6.1 years ago by
BioICoder
▴ 40
8
votes
15
replies
2.4k
views
7 follow
Forum:
How to identify your analytic data is true?
RNA-Seq
ChIP-Seq
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 6.7 years ago by
Hughie
▴ 80
460 results • Page
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Recent Votes
A: Fold change - a final explanation
Answer: sc/snRNASeq using cell ranger parameters
mitochondria in single nuclear RNAseq
Answer: Association study using SNP data
Comment: agilent human all exon sureselct v7 bed file
Answer: install package
Comment: Overlap File for RACON Genome Polisher
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Comment: TaxID mapping file
by
Lada
▴ 30
if I understood correctly, I might need fle `prot.accession2taxid.gz` file? According to the [documentation][1] in column 2 is Accession.ve…
Answer: install package
by
Pine
▴ 10
To follow on Mathew's reply, one way might be to try and see if you can download and install the package tarball locally: 1. Get the packag…
Comment: agilent human all exon sureselct v7 bed file
by
MiladAD
▴ 10
God bless you man.
Answer: install package
by
Mathew
▴ 50
Hi, This is what happens when I run some code to diagnose the issue. First, I wanted to see what version of R was required for the package…
Comment: TaxID mapping file
by
Lada
▴ 30
thank you, I'll look at these files/documents. .
Answer: LD-prune variants while maintaining a list of SNPs
by
Jautis
▴ 540
I was given a solution by a colleague -- it seems a little hacky, but worked really well! > one way to get this to work is to use --clu…
Answer: Association study using SNP data
by
drajangirija
• 0
Hi Matthew, Thank you very much for your inputs. I am working with Neogen genotyping data, which includes GC values less than 0.15.
Comment: Downloading full alignments from Pfam
by
bef1
• 0
I tried contacting Pfam, they replied that indeed there is an issue on their side with the full alignments, which should be repaired in the…
Comment: Seeking Bioinformatics/Drug Design Opportunities - PhD in Pharmacology with Expe
by
Mensur Dlakic
★ 27k
Don't know about others, but I would never contact someone about potential employment based only on their interests and with zero knowledge…
Comment: The GDC Legacy Archive is retiring soon.
by
Zhenyu Zhang
★ 1.2k
If you are talking about methylation idat files, they were all migrated from legacy to the data portal. If you are talking about other pl…
Comment: How to access TCGA samples that were treated with a specific drug?
by
Zhenyu Zhang
★ 1.2k
These TCGA samples were taken 10 ~ 20 years ago, and there is no way they have been treated by the modern immunotherapy. Are you sure tha…
Comment: Design matrix Differential expression analysis
by
Gordon Smyth
★ 7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file
by
lorena9132
▴ 10
Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file
by
Mathew
▴ 50
Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data
by
Mathew
▴ 50
Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
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