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421 results • Page 4 of 9
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7
votes
8
replies
2.0k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
11 months ago by K • 0
23
votes
12
replies
2.0k
views
6 follow
Forum: Whole-Exome Analysis on a Mainstream Desktop PC
NGS whole-exome
updated 11 months ago by 43k • written 3.9 years ago by 11k
5
votes
2
replies
2.0k
views
Forum: [Closed]Survey:Interested in how scientists communicate their work?This is how you can contribute!
survey communication sequencing
updated 12 months ago by 43k • written 6.4 years ago by ★ 2.8k
14
votes
9
replies
2.0k
views
Forum: The push toward standardisation
stadardisation
updated 12 months ago by 43k • written 6.5 years ago by 87k
0
votes
0
replies
2.0k
views
Forum: Any 'Biostars' like forum exclusively for bacterial Genomics ?
Bacterial-Genomics
updated 12 months ago by 43k • written 6.7 years ago by ▴ 180
22
votes
8
replies
2.0k
views
10 follow
Forum: Is there any online course for bioinformatics right now or in the next two or three months?
online-course mooc
updated 11 months ago by 43k • written 4.0 years ago by ▴ 50
12
votes
0
replies
1.9k
views
Forum: Free Bioinformatics Courses(Curriculum)
ossu course Curriculum
updated 11 months ago by 43k • written 4.5 years ago by ★ 1.3k
17
votes
14
replies
1.9k
views
10 follow
Forum: What would be the trend in next few years in NGS era?
NGS sequencing
updated 11 months ago by 43k • written 5.5 years ago by ▴ 800
9
votes
6
replies
1.9k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 8 months ago by 82k • written 18 months ago by ▴ 30
25
votes
7
replies
1.9k
views
6 follow
Forum: What Are The Best Bioinformatics Course Materials [2020]
course teaching
updated 11 months ago by 43k • written 3.4 years ago by 8.7k
7
votes
4
replies
1.9k
views
Forum: I'm currently in my second year of my phd, I'm intrested to develop somthing for galaxy server
workflow galaxy
updated 11 months ago by 43k • written 5.6 years ago by • 0
6
votes
5
replies
1.9k
views
Forum: Stanford HCP MS Biomedical Informatics vs Johns Hopkins MS Bioinformatics
career
updated 11 months ago by 43k • written 4.3 years ago by ▴ 70
1
vote
8
replies
1.9k
views
Forum: Statistics graduate wants to do some bioinformatics analysis
next-gen R statistics
updated 12 months ago by 43k • written 6.6 years ago by • 0
3
votes
4
replies
1.9k
views
Forum: Recommendation for applied bioinformatics labs focusing on cancer biology
cancer-genomics
updated 11 months ago by 43k • written 5.7 years ago by ▴ 100
0
votes
3
replies
1.9k
views
Forum: European Genome-phenome Archive (EGA) vs Gene Expression Omnibus (GEO)
GEO EGA
updated 11 months ago by 43k • written 5.2 years ago by ★ 9.4k
1
vote
1
reply
1.9k
views
Forum: Any suggestions for pursuing MBA for computational biologist
scientist management MBA
updated 12 months ago by 43k • written 6.6 years ago by ▴ 650
18
votes
16
replies
1.8k
views
Forum: Why are people not working on gene prioritization and candidate gene selection for new experiment design?
gene-prioritization
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
22
votes
12
replies
1.8k
views
6 follow
Forum: What were the most impactful Bioinformatics papers published this year
papers publications
updated 11 months ago by 43k • written 4.4 years ago by ▴ 520
2
votes
4
replies
1.8k
views
Forum: Crowdsourcing/Volunteer Bioinformatics - How to recognise volunteer effort and manage reliability of data
Volunteer alignment Assembly Crowd-sourcing genome
updated 12 months ago by 43k • written 6.8 years ago by ▴ 10
7
votes
10
replies
1.8k
views
Forum: Current MCB major thinking of going into Bioinformatics
career
updated 11 months ago by 43k • written 5.7 years ago by • 0
7
votes
6
replies
1.8k
views
Forum: Bioinformaticians - Am I on the Right Track?
Career
updated 11 months ago by 43k • written 4.4 years ago by ▴ 80
8
votes
4
replies
1.8k
views
Forum: Unsolved Topics in Bioinformatics
bioinformatics
updated 11 months ago by 43k • written 6.1 years ago by ▴ 40
8
votes
11
replies
1.8k
views
Forum: What makes a good bionformatics prediction service from the point of user experience?
server prediction-service
updated 12 months ago by 43k • written 6.6 years ago by ▴ 40
1
vote
4
replies
1.8k
views
Forum: What do you want to learn about bioinformatics?
course education
updated 11 months ago by 43k • written 5.4 years ago by ▴ 120
5
votes
7
replies
1.8k
views
Forum: Research Bazaar 2018
course workshop
updated 12 months ago by 43k • written 6.4 years ago by 8.4k
21
votes
18
replies
1.8k
views
Forum: Is it safe to keep our data in github
github
updated 11 months ago by 43k • written 4.0 years ago by ▴ 70
7
votes
5
replies
1.8k
views
Forum: Which is better: webgestalt vs david?
webgestalt david
updated 11 months ago by 43k • written 5.2 years ago by ★ 9.4k
4
votes
4
replies
1.7k
views
Forum: When will the hg19/grch37 finally become obsolete?
Reference-Genome
updated 11 months ago by 43k • written 5.0 years ago by ▴ 10
7
votes
7
replies
1.7k
views
Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 26 days ago by ★ 2.5k • written 27 days ago by • 0
9
votes
10
replies
1.7k
views
Forum: Brainstorming: applying bioinformatics NOT to public field. Ideas and perspectives
applied-sciences data-analysis
updated 11 months ago by 43k • written 6.1 years ago by ★ 1.3k
10
votes
10
replies
1.7k
views
Forum: Doctor looking fertility for a collaborator for text mining on pubmed
text-mining fertility pubmed
updated 12 months ago by 43k • written 6.5 years ago by • 0
6
votes
3
replies
1.7k
views
Forum: lincRNA analysis pipeline and relevant database
lncRNA
updated 11 months ago by 43k • written 5.6 years ago by ★ 9.4k
6
votes
15
replies
1.7k
views
Forum: PhD Bioinformatics on GWAS
SNP GWAS genome PHD
updated 11 months ago by 43k • written 4.3 years ago by ▴ 50
7
votes
3
replies
1.7k
views
Forum: [Please share] How do you keep your NGS data analysis methods/ strategies up to date? (e.g. Data sub-groupping, datasets overlapping, etc.)
NGS RNA-Seq ChIP-Seq
updated 12 months ago by 43k • written 6.6 years ago by ▴ 180
4
votes
13
replies
1.7k
views
Forum: Looking for Participants: Meenta NovaSeq RunShare Beta
RunShare next-gen NovaSeq
updated 11 months ago by 43k • written 4.8 years ago by ▴ 10
6
votes
5
replies
1.7k
views
Forum: Very generally speaking, what are valid criteria to decide that a sample is an outlier?
outliers
updated 11 months ago by 43k • written 3.4 years ago by ▴ 330
2
votes
8
replies
1.7k
views
7 follow
Forum: Which tools do you miss?
software
updated 11 months ago by 43k • written 3.7 years ago by ▴ 110
11
votes
8
replies
1.7k
views
Forum: Bioinformatics cores pricing model
pricing-models core Bioinformatics-services
updated 11 months ago by 43k • written 5.1 years ago by ▴ 160
1
vote
9
replies
1.7k
views
Forum: Care to speculate? Are Protein Fragments or Entire Protein Sequences useful when classifying via Machine Learning techniques
protein Machine-Learning classification
updated 11 months ago by 43k • written 5.3 years ago by ▴ 80
1
vote
1
reply
1.7k
views
Forum: Free Bioinformatics Training Resources (for non-bioinformaticians)
RNA-Seq
updated 11 months ago by 43k • written 4.9 years ago by ▴ 340
3
votes
5
replies
1.7k
views
Forum: How do you use BLAST?
blat sequence-searching blast
updated 11 months ago by 43k • written 6.0 years ago by 23k
26
votes
8
replies
1.7k
views
7 follow
Forum: Reasons to refuse to give support
design rna-seq statistics
updated 11 months ago by 43k • written 5.5 years ago by 8.3k
3
votes
3
replies
1.6k
views
Forum: Designing RNA-seq data analysis pipeline
RNA-seq sra ngs
updated 12 months ago by 43k • written 6.5 years ago by ▴ 510
1
vote
7
replies
1.6k
views
Forum: Best online certificates / masters for Bioinformatics
learning certification courses online-training
updated 11 months ago by 43k • written 4.0 years ago by • 0
7
votes
9
replies
1.6k
views
Forum: 10 Most important topic in Human evolutionary genomics
evolutionary-genomics evolutionary-medicine
updated 11 months ago by 43k • written 5.1 years ago by ▴ 40
12
votes
4
replies
1.6k
views
Forum: Bioinformatics and biotechnology market in future.
genome next-gen
updated 11 months ago by 43k • written 4.7 years ago by • 0
11
votes
6
replies
1.6k
views
Forum: Posting a preprint paper on biostars.com
preprint
updated 11 months ago by 43k • written 5.5 years ago by ▴ 760
19
votes
10
replies
1.6k
views
Forum: Pain points using commercial clouds
gpt tinybio
updated 8 months ago by ▴ 70 • written 8 months ago by ▴ 840
4
votes
7
replies
1.5k
views
Forum: Bioinformatics and/or computational biology congress 2019?
congress biology sequencing
updated 11 months ago by 43k • written 5.7 years ago by ★ 2.4k
1
vote
5
replies
1.5k
views
Forum: College Grad looking for research assistant position in computational biology/ bioinformatics
career
updated 11 months ago by 43k • written 6.2 years ago by • 0
421 results • Page 4 of 9
Recent Votes
Answer: joint callset and vcf sorting, unknown TAG issue
Answer: joint callset and vcf sorting, unknown TAG issue
A: what does 'none','unk','incmpl','cmpl' in UCSC refgene tables mean
A: what does 'none','unk','incmpl','cmpl' in UCSC refgene tables mean
Gff To Vcf
Comment: Longest transcript variant per gene
Comment: Longest transcript variant per gene
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Recent Awards • All
Scholar to pjb39 ▴ 200
Popular Question to Jen ▴ 70
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Recent Replies
Comment: Output file of satools flagstat empty by Mathew ▴ 90
Hi, In your samtools flagstat, -o specifies the output format. This can be set to 'default', 'json', or 'tsv'. If -o is not specified , t…
Comment: Tissue-specific DEG analysis with DEseq2 by BioinfGuru ★ 1.7k
I wrote an R package (see [rrdr.io][1], and [github][2]) some years ago to calculate tissue specificity from bulk RNAseq based on [this pap…
Comment: joint callset and vcf sorting, unknown TAG issue by Pierre Lindenbaum 161k
> set the Number= to 0 instead of 1; I'm not sure it's a problem. > probably I should also change the Type to Flag ah yes, my bad ! (f…
Comment: Output file of satools flagstat empty by GenoMax 142k
If you posted the entire command line then you did not include `-O $MAPPING/${i}.mapping_stats.txt` in that.
Comment: joint callset and vcf sorting, unknown TAG issue by Matteo Ungaro ▴ 100
@Pierre Lindenbaum I see. I looked up and, although present, the TAG goes like this in both files: `##INFO=<ID=1000gALT,Number=0,Type=Flag,…
Comment: joint callset and vcf sorting, unknown TAG issue by Matteo Ungaro ▴ 100
@Pierre Lindenbaum much appreciated, thanks for the explanation and possible approaches to solve this. I'm not in the position to run `U…
Comment: Tophat multiple or unique mapping criteria by Ruqaiya • 0
> The --b2-mp defines the mismatch penalty: the first number is used when the quality of the base is good, the second when it's bad. If you…
Comment: joint callset and vcf sorting, unknown TAG issue by Pierre Lindenbaum 161k
> Still, I can't understand the Invalid tag name: "1000gALT" the following line is missing in the VCF header: ##INFO=<ID=1000gALT,Num…
Answer: joint callset and vcf sorting, unknown TAG issue by Pierre Lindenbaum 161k
INFO at 121387974 is .;CpG this is an invalid INFO column. There is an invalid attribute named '.' followed by the attribute CpG, …
Comment: joint callset and vcf sorting, unknown TAG issue by Matteo Ungaro ▴ 100
@Pierre Lindenbaum as I don't know the meaning of `.;` and I've seen there are many in both files, I simply removed them with `grep -v`. …
Comment: joint callset and vcf sorting, unknown TAG issue by Matteo Ungaro ▴ 100
My bad I switched positions between the two files when looking the first time. They do indeed look abnormal but how can I fix it? Below the…
Comment: Adata.raw.X in LIANA, something wrong with conversion from Seurat to adata in py by beginner123 • 0
Hi, no I'm using the python implementation as linked above.
Comment: joint callset and vcf sorting, unknown TAG issue by Pierre Lindenbaum 161k
Show us the content of the INFO column at the problematic positions.
Comment: Tissue-specific DEG analysis with DEseq2 by ATpoint 82k
Sounds like full confounding. Be careful. Personally I would not do this comparison. There is no way to distinguish tissue effect from dono…
Answer: input file in rmats by Mathew ▴ 90
Hi, In the example they give in their GitHub (https://github.com/Xinglab/rmats-turbo/blob/v4.3.0/README.md): They have 2 sample groups wi…
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