128
votes
44
replies
30k
views
16 follow
34
votes
11
replies
30k
views
6 follow
84
votes
29
replies
30k
views
20 follow
updated 9 weeks ago by
amziepickles
•
0
•
written 7.6 years ago by
Obi Griffith
20k
5
votes
6
replies
30k
views
10
votes
7
replies
29k
views
14
votes
8
replies
29k
views
8 follow
19
votes
10
replies
29k
views
6 follow
48
votes
18
replies
29k
views
16 follow
17
votes
14
replies
29k
views
13 follow
updated 5 months ago by
Ram
40k
•
written 12.0 years ago by
Nicolas Rosewick
10k
24
votes
11
replies
29k
views
9 follow
written 10.9 years ago by
Pierre Lindenbaum
157k
20
votes
10
replies
29k
views
9
votes
12
replies
29k
views
6 follow
100
votes
38
replies
29k
views
34 follow
updated 1 day ago by
Jeremy Leipzig
21k
•
written 9.9 years ago by
14134125465346445
★
3.6k
50
votes
15
replies
29k
views
10 follow
26
votes
7
replies
29k
views
36
votes
16
replies
28k
views
14 follow
76
votes
35
replies
28k
views
13 follow
updated 5 months ago by
Nathan
▴
20
•
written 7.3 years ago by
andrew.j.skelton73
6.5k
28
votes
14
replies
28k
views
10 follow
31
votes
12
replies
28k
views
7 follow
updated 7 months ago by
Ram
40k
•
written 10.0 years ago by
Istvan Albert
98k
298
votes
122
replies
28k
views
29 follow
14
votes
8
replies
28k
views
updated 3 months ago by
minakshiboruahassam
•
0
•
written 9.3 years ago by
liu4gre
▴
210
24
votes
12
replies
28k
views
8 follow
15
votes
8
replies
28k
views
19
votes
9
replies
28k
views
7 follow
updated 4 months ago by
Ram
40k
•
written 5.9 years ago by
Arindam Ghosh
▴
510
99
votes
8
replies
28k
views
8 follow
Tutorial:
Guide to TCGA data
9
votes
5
replies
28k
views
7 follow
updated 8 months ago by
Ram
40k
•
written 8.3 years ago by
eager_learner
▴
60
17
votes
15
replies
28k
views
9 follow
38
votes
14
replies
27k
views
9 follow
15
votes
8
replies
27k
views
updated 8 months ago by
Ram
40k
•
written 8.4 years ago by
grayapply2009
▴
280
77
votes
86
replies
27k
views
20 follow
updated 3 months ago by
Ram
40k
•
written 6.8 years ago by
Brian Bushnell
18k
72
votes
71
replies
27k
views
17 follow
updated 3 months ago by
Ram
40k
•
written 5.1 years ago by
Kevin Blighe
86k
36
votes
23
replies
27k
views
11 follow
updated 28 days ago by
s.w.vanderlaan
▴
40
•
written 2.2 years ago by
Michal Nevo
▴
110
57
votes
19
replies
27k
views
6 follow
updated 7 months ago by
Ram
40k
•
written 11.0 years ago by
David Langenberger
10k
26
votes
13
replies
27k
views
8 follow
14
votes
6
replies
27k
views
7 follow
updated 7 weeks ago by
alejandrogzi
▴
30
•
written 10.6 years ago by
ftp
▴
140
53
votes
11
replies
26k
views
10 follow
updated 3 months ago by
Ram
40k
•
written 11.5 years ago by
Gabriel R.
★
2.9k
6
votes
5
replies
26k
views
19
votes
15
replies
26k
views
6 follow
45
votes
15
replies
26k
views
15 follow
updated 7 months ago by
baijiangshan9726
•
0
•
written 11.5 years ago by
yatung
▴
200
55
votes
23
replies
26k
views
11 follow
updated 8 months ago by
Ram
40k
•
written 8.4 years ago by
oliver.bayfield
▴
210
71
votes
26
replies
26k
views
15 follow
updated 7 months ago by
Ram
40k
•
written 9.6 years ago by
Istvan Albert
98k
13
votes
3
replies
26k
views
28
votes
7
replies
26k
views
7 follow
18
votes
14
replies
26k
views
7 follow
updated 5 weeks ago by
maximal_life
▴
20
•
written 7.3 years ago by
LJ
▴
260
63
votes
27
replies
26k
views
18 follow
updated 7 months ago by
Ram
40k
•
written 10.9 years ago by
Click downvote
▴
720
49
votes
28
replies
26k
views
12 follow
updated 6 months ago by
Ram
40k
•
written 11.5 years ago by
Varun Gupta
★
1.3k
24
votes
22
replies
26k
views
11 follow
46
votes
14
replies
26k
views
12 follow
66
votes
6
replies
26k
views
8 follow
updated 8 months ago by
Ram
40k
•
written 12.1 years ago by
Daniel Standage
4.1k
32
votes
15
replies
25k
views
8 follow
updated 11 months ago by
Ram
40k
•
written 10.4 years ago by
anika.menon22
▴
190
Recent Votes
Recent Locations •
All
India, 1 minute ago
France, 20 minutes ago
Italy, 27 minutes ago
Ireland, 28 minutes ago
Machhagan, 31 minutes ago
Galway, Ireland, 31 minutes ago
Australia, 38 minutes ago
Recent Awards •
All
Teacher to
benformatics
3.8k
Popular Question to
iislam
•
0
Popular Question to
dukecomeback
▴
40
Popular Question to
Sandhiya
▴
20
Recent Replies
Comment: Weirdness in annotation (missing allele frequencies)
by
Can Abdullah
•
0
Yes, I was confused as well. I think the same. Maybe Annovar uses some other resources besides gnomad, but it does not make sense. Also, I …
Comment: Weirdness in annotation (missing allele frequencies)
by
Can Abdullah
•
0
Thank you so much, I decided to move forward as you suggested. Initially, I thought using the most up-to-date databases and positions would…
Comment: Getting the overlap between two GTF files
by
GenoMax
134k
Something in `AGAT` should work: https://agat.readthedocs.io/en/latest/?badge=latest
Answer: Automate the Splitting of a VCF File by Sample (bcftools)
by
Pierre Lindenbaum
157k
> My problem has been with trying to loop the process.
ok here is a **nextflow** based solution,(NOT tested)
workflow {
…
Comment: Assessing Rockhopper's output
by
langziv
▴
50
I see.
I tried using the GUI Rockhopper for RNA-seq analysis of a K. pneumoniae strain, but the program didn't find the strain's assembly…
Answer: Getting the overlap between two GTF files
by
Pierre Lindenbaum
157k
bedtools intersect \
-a <(awk '/^[^#]/ {printf("%s\t%d\t%s\t%s\n",$1,int($4)-1,$5,$0);}' file1.gtf | sort -t $'\t' -k1,1 -k2…
Comment: Assessing Rockhopper's output
by
shelkmike
▴
980
I used Rockhopper only for bacterial genomes assembled into circular contigs or circular scaffolds.
Comment: Unable to install HorvathMammalMethylChip40manifest packages
by
ATpoint
77k
There is no package of that name in CRAN or Bioconductor. Where do you have it from, so which tutorial you follow?
Comment: Subclustering of intergated cells from scRNA-seq data
by
fifty_fifty
▴
60
thank you. This is exactly what I was looking for
Answer: Search RCSB with a list of protein names?
by
Mensur Dlakic
★
25k
This is not the most elegant solution, but it should work with previous suggestions.
In this remote directory:
http://ftp.wwpdb.org/p…
Answer: Automate the Splitting of a VCF File by Sample (bcftools)
by
Ram
40k
The manual says you can split samples out at once using the `+split` plugin. So, `bcftools +split -Oz -o <PATH> file.vcf.gz` should do the …
Comment: differences between trajectories in conditions with Monocle3 or other tools
by
Amitm
★
2.2k
Phate (or Monocle) doesn't do UMAP. If you have done UMAP already (using seurat) then you could use the cell barcode to UMAP cluster label …
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti
by
Y
•
0
I figured out how to make it work. The bams have to be comma separated not just by space:
cd "${input_directory_with_associated_bam_fi…
Comment: Search RCSB with a list of protein names?
by
Joseph
•
0
Hey, this is so close to what I'm looking for - I clarified in my edit. This is a great way to batch download lots of PDBs in RCSB by their…
Comment: Search RCSB with a list of protein names?
by
Joseph
•
0
This is a really neat package, but I don't think it does exactly what I want, so I've clarified my question. This seems like it grabs a PD…
Traffic: 1600 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6